Factsheet for AT3G23400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77518	Canola	plastid	73.94	75.81
Bra014946.1-P	Field mustard	plastid	73.94	75.81
CDX85096	Canola	plastid	72.54	75.46
Os11t0595200-01	Rice	plastid	57.39	60.37
KRG92362	Soybean	nucleus, plastid	55.99	60.0
Zm00001d007581_P001	Maize	plastid	57.04	59.56
PGSC0003DMT400044209	Potato	plastid	57.04	58.91
GSMUA_Achr10P...	Banana	plastid	56.34	58.18
Solyc09g090330.2.1	Tomato	plastid	56.34	57.97
KRH34425	Soybean	plastid	47.89	56.9
EES08771	Sorghum	plastid	57.39	56.21
TraesCS2B01G171300.1	Wheat	plastid	53.87	55.43
VIT_05s0049g01360.t01	Wine grape	plastid	55.99	54.27
TraesCS2A01G145900.1	Wheat	plastid	52.46	54.18
TraesCS2D01G150500.1	Wheat	plastid	52.82	54.15
HORVU0Hr1G039090.1	Barley	plastid	52.46	53.79
Os05t0304200-01	Rice	cytosol	16.9	30.57
Os05t0228900-01	Rice	cytosol	10.92	18.56

Protein Annotations

MapMan:35.1	EntrezGene:821921	UniProt:A0A178VGH8	ProteinID:AEE76761.1	ArrayExpress:AT3G23400	EnsemblPlantsGene:AT3G23400
RefSeq:AT3G23400	TAIR:AT3G23400	RefSeq:AT3G23400-TAIR-G	EnsemblPlants:AT3G23400.1	TAIR:AT3G23400.1	EMBL:AY086921
EMBL:AY383618	ProteinID:BAB02284.1	EMBL:BT024911	Symbol:FIB4	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0010193	GO:GO:0010287
GO:GO:0016020	GO:GO:0016043	GO:GO:0031977	GO:GO:0042742	RefSeq:NP_566728.1	ProteinID:OAP04854.1
InterPro:PAP/fibrillin_dom	PFAM:PF04755	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007131	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR31906	PANTHER:PTHR31906:SF15
UniProt:Q9LW57	UniParc:UPI0000042A7C	SEG:seg	:	:	:

Description

PAP6Plastid-lipid-associated protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LW57]

Coordinates

chr3:-:8376444..8378364

Molecular Weight (calculated)

30456.2 Da

IEP (calculated)

5.903

GRAVY (calculated)

-0.194

Length

284 amino acids

Sequence
(BLAST)

001: MATSSTFSSL LPSPPALLSD HRSPPPSIRY SFSPLTTPKS SRLGFTVPEK RNLAANSSLV EVSIGGESDP PPSSSGSGGD DKQIALLKLK LLSVVSGLNR
101: GLVASVDDLE RAEVAAKELE TAGGPVDLTD DLDKLQGKWR LLYSSAFSSR SLGGSRPGLP TGRLIPVTLG QVFQRIDVFS KDFDNIAEVE LGAPWPFPPL
201: EATATLAHKF ELLGTCKIKI TFEKTTVKTS GNLSQIPPFD IPRLPDSFRP SSNPGTGDFE VTYVDDTMRI TRGDRGELRV FVIA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.