Factsheet for GSMUA_Achr4P04940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11730_001	Banana	cytosol	38.82	80.09
VIT_04s0079g00690.t01	Wine grape	mitochondrion	25.88	55.4
KRG97999	Soybean	cytosol	25.66	54.93
KRH30892	Soybean	cytosol	25.44	54.46
VIT_04s0079g00710.t01	Wine grape	cytosol	24.56	52.58
Bra032010.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	22.81	49.52
CDY43144	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	22.81	49.52
Bra008570.1-P	Field mustard	cytosol	22.59	48.36
CDX69395	Canola	cytosol	22.59	48.36
CDY28744	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	22.15	48.1
CDY16947	Canola	cytosol	22.37	47.89
AT3G03190.1	Thale cress	cytosol	22.37	47.66
Bra023602.1-P	Field mustard	endoplasmic reticulum, extracellular	22.15	46.98
CDX85469	Canola	cytosol, mitochondrion	22.15	46.98
Solyc02g081340.2.1	Tomato	cytosol, endoplasmic reticulum	23.25	46.09
PGSC0003DMT400043105	Potato	cytosol, endoplasmic reticulum	23.25	46.09
AT5G17220.1	Thale cress	cytosol	21.49	45.79
CDY02726	Canola	cytosol	20.83	44.39
GSMUA_Achr2P02330_001	Banana	cytosol	20.83	43.98
GSMUA_Achr11P...	Banana	unclear	19.74	43.69
GSMUA_Achr5P17880_001	Banana	cytosol	19.96	41.18
GSMUA_Achr2P11180_001	Banana	cytosol	19.96	40.99
GSMUA_Achr4P29630_001	Banana	cytosol	18.2	37.56
GSMUA_Achr1P02260_001	Banana	cytosol	18.2	37.56
GSMUA_Achr1P02270_001	Banana	cytosol	17.32	34.35
CDY02724	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	21.27	28.36
GSMUA_Achr3P26860_001	Banana	cytosol	17.32	25.16
GSMUA_Achr7P03960_001	Banana	cytosol	20.83	24.61

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:11.4.1.2
MapMan:18.8.1.5	Gene3D:3.40.30.10	Gene3D:3.40.50.450	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr4G04940_001	EnsemblPlants:GSMUA_Achr4P04940_001	EnsemblPlants:GSMUA_Achr4T04940_001	InterPro:GST_C	InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	InterPro:LOG	InterPro:LOG_fam
UniProt:M0SL61	PFAM:PF00043	PFAM:PF02798	PFAM:PF03641	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR31223	PANTHER:PTHR31223:SF19	SUPFAM:SSF102405	SUPFAM:SSF47616	SUPFAM:SSF52833	TIGRFAMs:TIGR00730
InterPro:Thioredoxin-like_sf	UniParc:UPI0002958774	SEG:seg	:	:	:

Description

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04940_001]

Coordinates

chr4:+:3869239..3873622

Molecular Weight (calculated)

51063.6 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.239

Length

456 amino acids

Sequence
(BLAST)

001: MAVKVYGKPQ AVCPQRVMHC LVEKGVPFEF VLVDIDAMEQ KRPEYMEKHP FGQVPFIADG DFELFESRAI VRYFAAKYAD RGPNLLGRTA EERAKVEQWL
101: DVEAISYSPC AFTIVFNLFL LPIRGLPGNK GEAVAAMEKL DKVLEVYEKQ LSRTKYLAGD EFTLADLTHI PVTRYIVEHC GLAYLLDDKP HAKAWWEDVS
201: RRPAWKKVMS FEEEKEPHMM EDQTQAKSTA VAKRRVSSSS SSSSSPSSRF KRVCVFCGSS TGKKKGYQLA AIQLGKELVE RNIDLVYGGG SVGLMGLVSQ
301: AVFDGGRHVL GIIPRTLMPK EITGETIGEV QPVAGMHQRK AEMARQADAF VALPGGYGTL EELLEVITWA QLGIHDKPVG LLNVEGYYNT LLSFIDKAVD
401: EGFISPDARH IIISAQTAHE LLSKLEEYEP RHERVASKLR WEMEKLGHPP KSYIAR

Best Arabidopsis Sequence Match ( AT2G28305.1 )
(BLAST)

001: MEIESKFKRI CVFCGSSAGN KVSYKDAAIE LGTELVSRNI DLVYGGGSIG LMGLISQAVF NGGRHVIGVI PKTLMPREIT GETVGEVKAV ADMHQRKAEM
101: AKHSDAFIAL PGGYGTLEEL LEVITWAQLG IHDKPVGLLN VEGYYNSLLS FIDKAVEEGF ISPTARHIIV SAPSAKELVK KLEDYVPRHE KVASKKSWEM
201: EQIGLSPTCE ISR

Arabidopsis Description

LOG1Cytokinin riboside 5'-monophosphate phosphoribohydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178VS96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.