Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G071070.1 | Barley | plastid | 66.67 | 7.99 |
| CDY15291 | Canola | nucleus | 4.35 | 1.94 |
| HORVU6Hr1G038870.11 | Barley | cytosol | 10.14 | 1.33 |
| HORVU6Hr1G072030.1 | Barley | plastid | 14.49 | 1.32 |
| Bra011816.1-P | Field mustard | cytosol, mitochondrion | 7.25 | 0.7 |
| CDY68255 | Canola | cytosol, mitochondrion | 7.25 | 0.7 |
| HORVU4Hr1G010180.10 | Barley | cytosol | 7.25 | 0.69 |
| CDX69365 | Canola | cytosol | 7.25 | 0.69 |
| CDX89460 | Canola | nucleus | 7.25 | 0.64 |
| Bra030242.1-P | Field mustard | nucleus | 7.25 | 0.63 |
| CDY25593 | Canola | nucleus | 7.25 | 0.63 |
| CDX76928 | Canola | nucleus | 7.25 | 0.62 |
| AT2G22400.1 | Thale cress | cytosol | 7.25 | 0.62 |
| Bra038528.1-P | Field mustard | nucleus | 7.25 | 0.62 |
| CDY13765 | Canola | nucleus | 7.25 | 0.62 |
| VIT_07s0191g00040.t01 | Wine grape | nucleus | 7.25 | 0.6 |
| HORVU5Hr1G070390.9 | Barley | cytosol, nucleus, plastid | 7.25 | 0.57 |
| AT4G40000.1 | Thale cress | nucleus | 5.8 | 0.51 |
| Solyc05g051520.2.1 | Tomato | nucleus | 4.35 | 0.36 |
| PGSC0003DMT400041672 | Potato | nucleus | 4.35 | 0.34 |
| Solyc11g010110.1.1 | Tomato | nucleus | 4.35 | 0.34 |
| KRH45277 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G034260.1 | EnsemblPlantsGene:HORVU6Hr1G034260 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000B461FF6 | UniProt:A0A287TW49 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:159862930..159864248
Molecular Weight (calculated)
7851.7 Da
IEP (calculated)
7.609
GRAVY (calculated)
0.584
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MVNAILRKLV LLKETDSLPF PKIEGDDRAQ ARALSIIYSH PVVSLLYFLS FSSHHVVSLL YFVNLVDFC
001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL
Arabidopsis Description
NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.