CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49213	Soybean	cytosol, endoplasmic reticulum	88.89	88.89
KRH49214	Soybean	cytosol	88.44	88.44
KRH49212	Soybean	cytosol, nucleus	87.11	86.73
KRH49215	Soybean	cytosol, nucleus	88.0	86.46
KRH49216	Soybean	cytosol	86.22	86.22
KRH49219	Soybean	cytosol	37.33	84.85
KRH49221	Soybean	cytosol, extracellular	83.56	83.56
KRH00075	Soybean	cytosol	83.11	83.11
KRH49224	Soybean	cytosol	81.33	81.33
KRH49222	Soybean	cytosol	67.11	75.88
KRH00072	Soybean	cytosol	72.89	73.87
KRH49218	Soybean	cytosol	71.11	72.4
KRH17938	Soybean	cytosol	49.78	72.26
KRH75749	Soybean	cytosol	65.78	67.58
KRH62422	Soybean	cytosol	65.78	67.27
KRH62423	Soybean	cytosol	64.0	63.72
KRH75750	Soybean	cytosol, nucleus	64.0	63.72
KRH62274	Soybean	extracellular	28.89	63.11
KRH54547	Soybean	cytosol	28.0	54.78
KRH59021	Soybean	cytosol, nucleus	49.33	49.55
KRH52989	Soybean	cytosol	33.78	48.72
KRH72040	Soybean	cytosol	48.44	48.44
KRH59020	Soybean	cytosol	48.0	47.16
KRH42903	Soybean	cytosol	47.56	46.93
KRH59018	Soybean	cytosol	44.89	46.54
KRG90592	Soybean	cytosol	45.78	46.4
KRH42902	Soybean	cytosol	45.78	45.58
KRH19668	Soybean	cytosol, endoplasmic reticulum, mitochondrion	40.0	45.0
KRH59019	Soybean	cytosol	44.44	44.64
KRH34584	Soybean	cytosol	43.11	43.5
KRH19667	Soybean	endoplasmic reticulum, extracellular	42.67	43.05
KRH54548	Soybean	cytosol	43.11	41.28
KRH62275	Soybean	cytosol	19.11	38.05
KRH42905	Soybean	cytosol	47.56	37.54
KRG92200	Soybean	extracellular	37.33	34.01

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100500680	MapMan:18.8.1.4	Gene3D:3.40.30.10	EMBL:ACUP02011370	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G190200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748
InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1N2P4	InterPro:IPR004045
InterPro:IPR010987	EMBL:KM818466	EnsemblPlants:KRH00071	ProteinID:KRH00071	ProteinID:KRH00071.1	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00023D86FA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:45905249..45906578

Molecular Weight (calculated)

25903.3 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.118

Length

225 amino acids

Sequence
(BLAST)

001: MAAGQEDVKL LGVVGSPFVC RVQIALKLKG IEYKFVEENL ANKSDLLLKS NPVHKKVPVF IHNEKPIAES LVIVEYIDET WKNNPILPSD PYHRALARFW
101: SKFIDDKVFG AAWKSVFTLD EKEREKNVEE SLEALQFLEN ELKDNKFFGG EEFGLVDIAA IFIAFWIPIF QEIAGLQIFT SEKFPKLYKW SQEFMSHPVV
201: KEVLPPRDPL FAFFKARYES LSASK

Best Arabidopsis Sequence Match ( AT3G09270.1 )
(BLAST)

001: MNQEEHVKLL GLWGSPFSKR VEMVLKLKGI PYEYIEEDVY GNRSPMLLKY NPIHKKVPVL IHNGRSIAES LVIVEYIEDT WKTTHTILPQ DPYERAMARF
101: WAKYVDEKVM LAVKKACWGP ESEREKEVKE AYEGLKCLEK ELGDKLFFGG ETIGFVDIAA DFIGYWLGIF QEASGVTIMT AEEFPKLQRW SEDFVGNNFI
201: KEVLPPKEKL VAVLKAMFGS VTSN

Arabidopsis Description

GSTU8Glutathione S-transferase U8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.