CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22945350

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49224	Soybean	cytosol	95.56	95.56
KRH00075	Soybean	cytosol	87.11	87.11
KRH49219	Soybean	cytosol	38.22	86.87
KRH17938	Soybean	cytosol	58.67	85.16
KRH00071	Soybean	nucleus	83.56	83.56
KRH49212	Soybean	cytosol, nucleus	83.11	82.74
KRH49222	Soybean	cytosol	72.44	81.91
KRH49214	Soybean	cytosol	81.78	81.78
KRH49213	Soybean	cytosol, endoplasmic reticulum	81.78	81.78
KRH49215	Soybean	cytosol, nucleus	83.11	81.66
KRH49216	Soybean	cytosol	81.33	81.33
KRH00072	Soybean	cytosol	70.22	71.17
KRH49218	Soybean	cytosol	68.0	69.23
KRH62422	Soybean	cytosol	65.78	67.27
KRH75749	Soybean	cytosol	64.89	66.67
KRH62274	Soybean	extracellular	29.33	64.08
KRH62423	Soybean	cytosol	62.22	61.95
KRH75750	Soybean	cytosol, nucleus	62.22	61.95
KRH54547	Soybean	cytosol	27.56	53.91
KRH72040	Soybean	cytosol	52.44	52.44
KRH59021	Soybean	cytosol, nucleus	50.22	50.45
KRH59020	Soybean	cytosol	49.33	48.47
KRH59018	Soybean	cytosol	46.67	48.39
KRH42903	Soybean	cytosol	48.89	48.25
KRH52989	Soybean	cytosol	33.33	48.08
KRH42902	Soybean	cytosol	47.11	46.9
KRG90592	Soybean	cytosol	46.22	46.85
KRH59019	Soybean	cytosol	46.22	46.43
KRH19668	Soybean	cytosol, endoplasmic reticulum, mitochondrion	40.0	45.0
KRH34584	Soybean	cytosol	43.11	43.5
KRH19667	Soybean	endoplasmic reticulum, extracellular	42.67	43.05
KRH54548	Soybean	cytosol	42.22	40.43
KRH42905	Soybean	cytosol	48.44	38.25
KRH62275	Soybean	cytosol	18.67	37.17
KRG92200	Soybean	extracellular	36.89	33.6

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EntrezGene:547579	EMBL:ACUP02004341	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G140400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748
InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1KK66	InterPro:IPR004045
InterPro:IPR010987	ProteinID:KRH49220.1	EnsemblPlants:KRH49221	ProteinID:KRH49221	ProteinID:KRH49221.1	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00023C7C01	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:16640686..16642835

Molecular Weight (calculated)

25854.0 Da

IEP (calculated)

5.433

GRAVY (calculated)

-0.220

Length

225 amino acids

Sequence
(BLAST)

001: MASSQEEVTL LGATGSPFVC RVHIALKLKG VEYKYVEENL RNKSELLLKS NPVHKKVPVF IHNEKPIAES LVIVEYIDET WKNNPILPSD PYQRALARFW
101: SKFIDDKVFG AAWKSVFTAD EKEREKNVEE AIEALQFLEN EIKDKKFFGG EEIGLVDIAA VYIAFWVPMV QEIAGLELFT SEKFPKLHNW SQEFLNHPIV
201: KESLPPRDPV FSFFKGLYES LFGSK

Best Arabidopsis Sequence Match ( AT2G29490.1 )
(BLAST)

001: MAEKEESVKL LGFWASPFSR RVEMALKLKG VPYEYLEEDL PNKTPLLLEL NPLHKKVPVL VHNDKILLES HLILEYIDQT WKNSPILPQD PYEKAMARFW
101: AKFIDDQILT LGFRSLVKAE KGREVAIEET RELLMFLEKE VTGKDFFGGK TIGFLDMIAG SMIPFCLARL WKGIGIDMIP EEKFPELNRW IKNLEEVEAV
201: RGCIPPREKQ IERMTKIAET IKSA

Arabidopsis Description

GSTU1Glutathione S-transferase U1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.