CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59018	Soybean	cytosol	73.21	75.58
KRH59020	Soybean	cytosol	77.23	75.55
KRH42903	Soybean	cytosol	75.89	74.56
KRH59019	Soybean	cytosol	74.11	74.11
KRH42902	Soybean	cytosol	71.43	70.8
KRH42905	Soybean	cytosol	86.61	68.07
VIT_05s0049g01090.t01	Wine grape	endoplasmic reticulum	66.07	65.2
VIT_05s0049g01070.t01	Wine grape	cytosol, endoplasmic reticulum	66.07	65.2
VIT_05s0049g01120.t01	Wine grape	endoplasmic reticulum	65.62	64.76
VIT_05s0049g01100.t01	Wine grape	endoplasmic reticulum	65.62	64.76
VIT_05s0049g01080.t01	Wine grape	cytosol, endoplasmic reticulum	65.62	61.51
KRH49219	Soybean	cytosol	26.79	60.61
KRH62274	Soybean	extracellular	26.79	58.25
KRG90592	Soybean	cytosol	50.89	51.35
KRH75749	Soybean	cytosol	49.55	50.68
KRH72040	Soybean	cytosol	50.89	50.67
KRH49221	Soybean	cytosol, extracellular	50.45	50.22
KRH52989	Soybean	cytosol	34.82	50.0
KRH62422	Soybean	cytosol	49.11	50.0
KRH00075	Soybean	cytosol	50.0	49.78
KRH19668	Soybean	cytosol, endoplasmic reticulum, mitochondrion	44.2	49.5
KRH49216	Soybean	cytosol	49.55	49.33
KRH49224	Soybean	cytosol	49.55	49.33
KRH00071	Soybean	nucleus	49.55	49.33
KRH49213	Soybean	cytosol, endoplasmic reticulum	49.11	48.89
KRH54547	Soybean	cytosol	25.0	48.7
KRH49212	Soybean	cytosol, nucleus	49.11	48.67
KRH49214	Soybean	cytosol	48.66	48.44
KRH19667	Soybean	endoplasmic reticulum, extracellular	48.21	48.43
KRH00072	Soybean	cytosol	47.77	48.2
KRH49215	Soybean	cytosol, nucleus	48.21	47.16
KRH49222	Soybean	cytosol	41.52	46.73
KRH49218	Soybean	cytosol	45.98	46.61
KRH17938	Soybean	cytosol	31.7	45.81
KRH62423	Soybean	cytosol	43.75	43.36
KRH75750	Soybean	cytosol, nucleus	43.3	42.92
KRH62275	Soybean	cytosol	21.43	42.48
KRH34584	Soybean	cytosol	41.52	41.7
KRH54548	Soybean	cytosol	41.52	39.57
KRG92200	Soybean	extracellular	35.27	31.98

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EntrezGene:547583	UniProt:A0A0B5E8V1	EMBL:ACUP02003299
ncoils:Coil	EnsemblPlantsGene:GLYMA_05G161600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488
GO:GO:0005515	GO:GO:0016740	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818438	EnsemblPlants:KRH59021	ProteinID:KRH59021	ProteinID:KRH59021.1
PFAM:PF00043	PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF474
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000189D758	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:35308516..35310360

Molecular Weight (calculated)

25891.2 Da

IEP (calculated)

6.693

GRAVY (calculated)

-0.175

Length

224 amino acids

Sequence
(BLAST)

001: MGSEEVKLLS FFASPFGKRV EWALKLKGVE YEYIEQDIFN KTSLLLQLNP VHKKVPVLVH AHKPIAESFV IVEYVDETWK QYPLLPRDPY QRALARFWAN
101: FAEQKLLDAA WIGMYSSGDE QQNAVKVARE AIEKIEEEIK GKKYFGGENI GYLDIALGWI SYWLPIWEEV GSIQIIDPLK FPAITAWITN FLSHPVIKDN
201: LPPRDKMLVY FHSRRTALSS TFQG

Best Arabidopsis Sequence Match ( AT2G29420.1 )
(BLAST)

001: MAERSNSEEV KLLGMWASPF SRRIEIALTL KGVSYEFLEQ DITNKSSLLL QLNPVHKMIP VLVHNGKPIS ESLVILEYID ETWRDNPILP QDPYERTMAR
101: FWSKFVDEQI YVTAMKVVGK TGKERDAVVE ATRDLLMFLE KELVGKDFLG GKSLGFVDIV ATLVAFWLMR TEEIVGVKVV PVEKFPEIHR WVKNLLGNDV
201: IKKCIPPEDE HLKYIRARME KLNIKSA

Arabidopsis Description

GSTU7Glutathione S-transferase U7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.