CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62423	Soybean	cytosol	94.69	94.69
KRH62274	Soybean	extracellular	29.2	64.08
KRH49216	Soybean	cytosol	63.72	64.0
KRH00071	Soybean	nucleus	63.72	64.0
KRH49214	Soybean	cytosol	63.72	64.0
KRH49212	Soybean	cytosol, nucleus	63.72	63.72
KRH49219	Soybean	cytosol	27.88	63.64
KRH49213	Soybean	cytosol, endoplasmic reticulum	63.27	63.56
KRH00075	Soybean	cytosol	62.83	63.11
KRH49221	Soybean	cytosol, extracellular	61.95	62.22
KRH49224	Soybean	cytosol	61.5	61.78
KRH62422	Soybean	cytosol	59.73	61.36
KRH49215	Soybean	cytosol, nucleus	61.5	60.7
KRH75749	Soybean	cytosol	58.41	60.27
KRH00072	Soybean	cytosol	58.41	59.46
KRH49222	Soybean	cytosol	51.77	58.79
KRH49218	Soybean	cytosol	56.19	57.47
KRH17938	Soybean	cytosol	38.05	55.48
KRH54547	Soybean	cytosol	26.11	51.3
KRH52989	Soybean	cytosol	33.63	48.72
KRH72040	Soybean	cytosol	48.23	48.44
KRH59018	Soybean	cytosol	44.25	46.08
KRH19668	Soybean	cytosol, endoplasmic reticulum, mitochondrion	39.82	45.0
KRG90592	Soybean	cytosol	42.92	43.69
KRH34584	Soybean	cytosol	42.92	43.5
KRH19667	Soybean	endoplasmic reticulum, extracellular	42.92	43.5
KRH59021	Soybean	cytosol, nucleus	42.92	43.3
KRH54548	Soybean	cytosol	44.69	42.98
KRH59020	Soybean	cytosol	42.92	42.36
KRH42903	Soybean	cytosol	42.48	42.11
KRH59019	Soybean	cytosol	41.59	41.96
KRH42902	Soybean	cytosol	41.59	41.59
KRH62275	Soybean	cytosol	17.7	35.4
KRG92200	Soybean	extracellular	37.17	34.01
KRH42905	Soybean	cytosol	42.48	33.68

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100306119	MapMan:18.8.1.4	Gene3D:3.40.30.10	EMBL:ACUP02000476	EnsemblPlantsGene:GLYMA_01G106100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1J727	InterPro:IPR004045	InterPro:IPR010987
EMBL:KM818428	EnsemblPlants:KRH75750	ProteinID:KRH75750	ProteinID:KRH75750.1	PFAM:PF00043	PFAM:PF02798
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI00023BDF23	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:35880778..35882807

Molecular Weight (calculated)

25872.1 Da

IEP (calculated)

7.163

GRAVY (calculated)

-0.319

Length

226 amino acids

Sequence
(BLAST)

001: MAKDYGEVEL FGVGGSPFAR RVQIALELKG VQYTYFEEDL RNKSDLLIKY NPIHKKVPVL VHNGRPLAES LVILEYIDET WENHHPILPQ QPYDRALARF
101: WSRFIDDKCM PAISKAAFTA DKEERDKGTE ESLESLQILE NVLKHKFFGG ETTIGIVDIA AGFIAFWLPA IEEAVGLKLL TNEKFPKLYK WGEDYTNHPV
201: VKKNLPQRDR VVGFFKARYA SITASK

Best Arabidopsis Sequence Match ( AT1G59700.1 )
(BLAST)

001: MGEKEEVKLL GVWYSPYAIR PKIALRLKSV DYDYVEENLF GSKSELLLKS NPVHKKVPVL LHNNKPIVES LNIVEYIDET WNSSAPSILP SHPYDRALAR
101: FWSDFVDNKW FPALRMAAIT KSEDAKAKAM EEVEEGLLQL EDAFVSISKG KPFFGGEAIG FMDICFGSFV VLLKAREKFK AEKLLDESKT PSLCKWADRF
201: LSDETVKNVA PEIEKVAEFL QELEVRAQSA ASRS

Arabidopsis Description

GSTU16Glutathione S-transferase U16 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.