CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0661100-01	Rice	cytosol, nucleus, peroxisome, plastid	83.51	83.29
TraesCS6D01G230500.1	Wheat	cytosol, plastid	81.35	80.91
HORVU0Hr1G023540.3	Barley	plastid	80.81	80.59
HORVU6Hr1G063370.1	Barley	plastid	80.81	80.59
TraesCS6A01G248400.1	Wheat	cytosol, plastid	80.54	80.11
TraesCS6B01G276300.1	Wheat	plastid	80.27	79.84
Zm00001d017502_P002	Maize	extracellular	84.05	70.2
OQU89957	Sorghum	cytosol	49.46	57.55
EER91963	Sorghum	cytosol	55.95	54.19
EES13815	Sorghum	peroxisome	53.24	52.39
OQU78907	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	38.11	51.84
EER96661	Sorghum	plastid	53.24	51.71
KXG30780	Sorghum	cytosol	49.19	48.92
KXG19623	Sorghum	cytosol	50.54	48.32
EER97568	Sorghum	cytosol, plastid	46.22	48.17
EER97569	Sorghum	cytosol, plastid	45.95	48.02
EER94771	Sorghum	cytosol, peroxisome, plastid	46.49	46.87
KXG36741	Sorghum	cytosol	45.41	46.15
OQU89414	Sorghum	cytosol	15.95	34.91

Protein Annotations

MapMan:3.3.2	Gene3D:3.40.50.1000	UniProt:A0A194YS65	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009409	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	ProteinID:KXG31079.1	EnsemblPlants:OQU85690
ProteinID:OQU85690	ProteinID:OQU85690.1	ProteinID:OQU85691.1	ProteinID:OQU85692.1	ProteinID:OQU85693.1	ProteinID:OQU85694.1
PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF14	EnsemblPlantsGene:SORBI_3004G293500	SUPFAM:SSF56784	TIGRFAMs:TIGR00685
TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0001C80CE8	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:63363744..63368623

Molecular Weight (calculated)

40911.3 Da

IEP (calculated)

8.344

GRAVY (calculated)

-0.177

Length

370 amino acids

Sequence
(BLAST)

001: MDMSSSSPVI TDPISISPPL LGGLTSNLMP FSVMSGGCSS PSMTASRRKI EEVLVNGLLD AMKSSSPRKK HNLAFGQDNS LDEDPAYSAW LSKCPSALTS
101: FKQIVANAQG RRIAVFLDYD GTLSPIVDDP DKAFMSPVMR AAVRNVAKYF PTAIVSGRSR KKVSEFVQLK ELYYAGSHGM DIVTSVAAHA TEKCKQANLF
201: QPACEFLPMI DEVSKSLLEV TSGIEGARVE NNKFCVSVHY RNVAEKDWKV VAGLVKQVLE AFPRLKVTNG RMVLEVRPVI DWDKGKAVEF LLQSLGLNDS
301: EDVIPIYIGD DRTDEDAFKV LRERKCGYGI LVSQVPKDTT EAFYSLRDPS EVMGFLNSLV RWKKHSLRRN

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.