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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 6
  • golgi 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34300.1 EES01631 AT2G41100.1 17360592
AT1G34300.1 EES09201 AT2G41100.1 17360592
AT1G34300.1 EES16322 AT2G41100.1 17360592
AT1G34300.1 OQU78227 AT2G41100.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034781_P001 Maize endoplasmic reticulum 91.67 91.67
TraesCS5D01G519800.1 Wheat plasma membrane 82.04 81.09
TraesCS4A01G353300.1 Wheat plasma membrane 82.28 81.04
TraesCS5B01G520600.1 Wheat plasma membrane 81.69 80.56
HORVU5Hr1G118460.1 Barley plasma membrane 81.22 80.09
GSMUA_Achr10P... Banana plasma membrane 56.57 69.75
HORVU2Hr1G106300.1 Barley extracellular 29.11 69.47
HORVU2Hr1G020630.1 Barley cytosol, plastid 28.52 68.26
VIT_18s0086g00200.t01 Wine grape cytosol 46.01 63.33
VIT_18s0086g00210.t01 Wine grape plasma membrane 59.86 60.07
PGSC0003DMT400077643 Potato plasma membrane 58.57 59.62
Solyc11g013880.1.1 Tomato plasma membrane 58.45 59.5
KRH70212 Soybean plasma membrane 57.51 58.61
CDX91781 Canola extracellular, plasma membrane, vacuole 49.88 58.46
KRH08565 Soybean plasma membrane 57.28 58.44
KRG91776 Soybean plasma membrane 54.81 56.95
Bra028049.1-P Field mustard plasma membrane 55.28 56.75
CDY46464 Canola plasma membrane 54.93 56.52
Bra036747.1-P Field mustard plasma membrane 54.93 56.52
CDY24320 Canola plasma membrane 55.87 56.47
CDY03159 Canola plasma membrane 55.05 56.03
AT1G34300.1 Thale cress plasma membrane 53.99 55.49
CDX90728 Canola plasma membrane 49.18 54.06
Bra000686.1-P Field mustard plasma membrane 48.36 53.23
KXG19268 Sorghum plasma membrane 18.31 34.29
OQU76372 Sorghum plasma membrane 30.63 31.15
OQU80090 Sorghum plasma membrane 27.82 30.15
KXG37964 Sorghum endoplasmic reticulum, golgi, vacuole 28.29 29.83
KXG29880 Sorghum plasma membrane 28.99 29.44
EER88498 Sorghum plasma membrane 28.87 29.29
KXG27741 Sorghum endoplasmic reticulum, extracellular, plasma membrane 26.53 28.86
EES15335 Sorghum plasma membrane 28.29 28.45
EES14230 Sorghum plasma membrane 26.41 28.3
EES03148 Sorghum plasma membrane 19.72 27.86
EES07585 Sorghum plasma membrane 28.64 27.6
EER96846 Sorghum plasma membrane 29.23 27.54
EES01170 Sorghum plasma membrane, plastid 16.31 27.52
EES00096 Sorghum plasma membrane 27.82 27.34
OQU86485 Sorghum plasma membrane 19.25 26.32
EES17510 Sorghum mitochondrion, plasma membrane 28.29 26.05
OQU86484 Sorghum cytosol 6.22 25.36
OQU79589 Sorghum plasma membrane 15.61 21.25
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:18.4.1.24.2Gene3D:2.90.10.10Gene3D:3.30.200.20UniProt:A0A1Z5S3X9InterPro:Bulb-type_lectin_domInterPro:Bulb-type_lectin_dom_sf
ncoils:CoilGO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672
GO:GO:0004674GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0008150GO:GO:0008152GO:GO:0009856
GO:GO:0009875GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310
GO:GO:0016740GO:GO:0019538GO:GO:0048544InterPro:IPR000719InterPro:IPR001480InterPro:IPR003609
InterPro:IPR036426InterPro:Kinase-like_dom_sfEnsemblPlants:OQU90662ProteinID:OQU90662ProteinID:OQU90662.1PFAM:PF00069
PFAM:PF00954PFAM:PF01453PFAM:PF08276PIRSF:PIRSF000641ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PFscan:PS50927PANTHER:PTHR27002PANTHER:PTHR27002:SF52InterPro:Pan_appInterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BSSMART:SM00108SMART:SM00220EnsemblPlantsGene:SORBI_3001G020500InterPro:SRK-like_kinaseSUPFAM:SSF51110
SUPFAM:SSF56112InterPro:S_locus_glycoprot_domInterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000B8BA4D0
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:1703099..1705675
Molecular Weight (calculated)
91362.3 Da
IEP (calculated)
8.009
GRAVY (calculated)
-0.116
Length
852 amino acids
Sequence
(BLAST)
001: MRPLRRSSGD LAAFGCCLFL LLPLLSRGAD MPVGSTLSPG NSATWTSPNS TFSLGFTASA SSPSLFVAAI SYAGGVPVWS AGDGAAVDSR GSLRLSSNGD
101: LQLVNGSGTV LWSTNTGGQN VSAAAVQESG NLVLKDSRGA TLWQSFDHPT DTVVMSQNFT SGMNLTSGSY VFSVDKATGN LTLRWTSAAT TVTYFNKGYN
201: TSFTGNKTLT SPTLTMQTNG IVSLTDGTLT SPVVVAYSSN YGESGDMMRF VRLDADGNFR AYSAARGSNT ATEQWSAVAD QCQVFGYCGN MGVCSYNGTA
301: PVCGCPSQNF QLTDASKPRG GCTRKADLAS CPGNSTMLQL DNTQFLTYPP EITTEQFFVG ITACRLNCLS GSSCVASTAL SDGSGLCFLK VSNFVSGYQS
401: AALPSTSFVK PNPVPGSTTG APSRGGPGVR AWVVAVVVLA VVSGLVLCEW ALWWFFCRHS PKFGPASAQY ALLEYASGAP VQFSYREMQR STKGFKEKLG
501: AGGFGAVYRG VLANRTVVAV KQLEGIEQGE KQFRMEVATI SSTHHLNLVR LIGFCSEGRH RLLVYEFMKN GSLDAFLFGG DRDAPPPGGK MPWPTRFAVA
601: VGTARGITYL HEECRDCIVH CDIKPENILL DEHFNAKVSD FGLAKLVNPK DHRHRTLTSV RGTRGYLAPE WLANLPITAK SDVYSYGMVL LETVSGRRNF
701: DVSEETGRKK FSVWAYEEYE RGNLAGIVDR RLPAEDLDMA QVERAVQVSF WCIQEQPAQR PSMGKVVQML EGVMELERPP PPKSSDSFLS TTTATSAVSS
801: SMVSTVVSSG APVAPAPSPT LEQEMALGRS ESARNRERVS RQLLSPQPYM TM
Best Arabidopsis Sequence Match ( AT1G34300.1 )
(BLAST)
001: MAVKTPFLKL LPLLLLLLHF PFSFSTIPLG SVIYASGSNQ NWPSPNSTFS VSFVPSPSPN SFLAAVSFAG SVPIWSAGTV DSRGSLRLHT SGSLRLTNGS
101: GTTVWDSKTD RLGVTSGSIE DTGEFILLNN RSVPVWSSFD NPTDTIVQSQ NFTAGKILRS GLYSFQLERS GNLTLRWNTS AIYWNHGLNS SFSSNLSSPR
201: LSLQTNGVVS IFESNLLGGA EIVYSGDYGD SNTFRFLKLD DDGNLRIYSS ASRNSGPVNA HWSAVDQCLV YGYCGNFGIC SYNDTNPICS CPSRNFDFVD
301: VNDRRKGCKR KVELSDCSGN TTMLDLVHTR LFTYEDDPNS ESFFAGSSPC RANCLSSVLC LASVSMSDGS GNCWQKHPGS FFTGYQWPSV PSTSYVKVCG
401: PVVANTLERA TKGDDNNSKV HLWIVAVAVI AGLLGLVAVE IGLWWCCCRK NPRFGTLSSH YTLLEYASGA PVQFTYKELQ RCTKSFKEKL GAGGFGTVYR
501: GVLTNRTVVA VKQLEGIEQG EKQFRMEVAT ISSTHHLNLV RLIGFCSQGR HRLLVYEFMR NGSLDNFLFT TDSAKFLTWE YRFNIALGTA KGITYLHEEC
601: RDCIVHCDIK PENILVDDNF AAKVSDFGLA KLLNPKDNRY NMSSVRGTRG YLAPEWLANL PITSKSDVYS YGMVLLELVS GKRNFDVSEK TNHKKFSIWA
701: YEEFEKGNTK AILDTRLSED QTVDMEQVMR MVKTSFWCIQ EQPLQRPTMG KVVQMLEGIT EIKNPLCPKT ISEVSFSGNS MSTSHASMFV ASGPTRSSSF
801: SATRSFQTMG ITSSGPASTR ISEGSMLGS
Arabidopsis Description
G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.