Factsheet for VIT_18s0086g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34300.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G34300.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0086g00200.t01	Wine grape	cytosol	60.31	82.71
PGSC0003DMT400077643	Potato	plasma membrane	67.96	68.94
Solyc11g013880.1.1	Tomato	plasma membrane	67.73	68.7
KRH70212	Soybean	plasma membrane	66.78	67.82
GSMUA_Achr10P...	Banana	plasma membrane	55.12	67.73
KRH08565	Soybean	plasma membrane	65.14	66.23
KRG91776	Soybean	plasma membrane	62.31	64.51
CDX91781	Canola	extracellular, plasma membrane, vacuole	54.3	63.41
CDY46464	Canola	plasma membrane	60.78	62.32
Bra036747.1-P	Field mustard	plasma membrane	60.78	62.32
Bra028049.1-P	Field mustard	plasma membrane	60.19	61.57
AT1G34300.1	Thale cress	plasma membrane	60.07	61.52
Zm00001d034781_P001	Maize	endoplasmic reticulum	60.9	60.68
TraesCS5D01G519800.1	Wheat	plasma membrane	61.6	60.67
CDY24320	Canola	plasma membrane	60.19	60.62
HORVU5Hr1G118460.1	Barley	plasma membrane	61.48	60.42
TraesCS5B01G520600.1	Wheat	plasma membrane	61.37	60.3
CDX90728	Canola	plasma membrane	55.01	60.26
Os03t0838100-01	Rice	plasma membrane	60.9	60.26
TraesCS4A01G353300.1	Wheat	plasma membrane	61.37	60.23
CDY03159	Canola	plasma membrane	59.36	60.22
OQU90662	Sorghum	plasma membrane	60.07	59.86
Bra000686.1-P	Field mustard	plasma membrane	54.18	59.43
HORVU5Hr1G118510.1	Barley	endoplasmic reticulum, extracellular, vacuole	25.68	49.89
TraesCS5B01G520400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	25.8	49.77
TraesCS4A01G353100.1	Wheat	extracellular	24.73	49.41
TraesCS5D01G519600.1	Wheat	cytosol	25.8	46.9
HORVU2Hr1G106300.1	Barley	extracellular	18.85	44.82
HORVU2Hr1G020630.1	Barley	cytosol, plastid	18.26	43.54
VIT_11s0016g05440.t01	Wine grape	plasma membrane	34.75	36.33
VIT_12s0028g01450.t01	Wine grape	plasma membrane	17.67	35.71
VIT_16s0050g01920.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	30.62	34.85
VIT_04s0008g05500.t01	Wine grape	cytosol, nucleus, plasma membrane	32.27	34.68
VIT_16s0050g01880.t01	Wine grape	plasma membrane	34.98	34.66
VIT_08s0032g00830.t01	Wine grape	cytosol	4.12	34.31
VIT_11s0016g04840.t01	Wine grape	plasma membrane	18.14	34.22
VIT_08s0032g00810.t01	Wine grape	cytosol	6.71	31.67
VIT_12s0028g01640.t01	Wine grape	plasma membrane	24.5	31.33
VIT_12s0028g01430.t01	Wine grape	plasma membrane	28.74	30.54
VIT_09s0002g06830.t01	Wine grape	plasma membrane	30.98	29.35
VIT_12s0028g01530.t01	Wine grape	plasma membrane	28.74	28.98
VIT_12s0028g01460.t01	Wine grape	plasma membrane	26.27	28.7
VIT_12s0028g01650.t01	Wine grape	plasma membrane	28.03	28.27
VIT_12s0028g01280.t01	Wine grape	plasma membrane	25.91	25.55
VIT_12s0028g01630.t01	Wine grape	plastid	26.62	25.28
VIT_18s0001g03390.t01	Wine grape	plastid	21.67	21.67
VIT_12s0028g01520.t01	Wine grape	plasma membrane	28.39	18.24
VIT_12s0028g01490.t01	Wine grape	cytosol	2.36	18.18
VIT_12s0028g01270.t01	Wine grape	plasma membrane	26.03	17.92

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100252926	wikigene:100252926	MapMan:18.4.1.24.2	Gene3D:2.90.10.10	Gene3D:3.30.200.20	EMBL:AM455008
InterPro:Bulb-type_lectin_dom	InterPro:Bulb-type_lectin_dom_sf	ProteinID:CAN67775	ProteinID:CAN67775.1	ProteinID:CCB60806	ProteinID:CCB60806.1
UniProt:F6I1I9	EMBL:FN596511	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009856	GO:GO:0009875	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0048544	InterPro:IPR000719	InterPro:IPR001480
InterPro:IPR036426	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100252926	wikigene:LOC100252926	PFAM:PF00069	PFAM:PF00954
PFAM:PF01453	PIRSF:PIRSF000641	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50927
PANTHER:PTHR27002	PANTHER:PTHR27002:SF52	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00108	SMART:SM00220
InterPro:SRK-like_kinase	SUPFAM:SSF51110	SUPFAM:SSF56112	InterPro:S_locus_glycoprot_dom	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI00015CCAAD	ArrayExpress:VIT_18s0086g00210	EnsemblPlantsGene:VIT_18s0086g00210	EnsemblPlants:VIT_18s0086g00210.t01	unigene:Vvi.12515
RefSeq:XP_002267635	RefSeq:XP_002267635.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:17424851..17427601

Molecular Weight (calculated)

91385.4 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.017

Length

849 amino acids

Sequence
(BLAST)

001: MDLPCLVLPL SILLLFSSAV SSADIPLGAS ITASDLNQTW NSPNSTFSLG FIAATPTSFY AAITYGGVPI WRAGGAYPVA VDFGGSFRFL TSGNLHLVSS
101: NGTVLWESGT AGRGVSSATL SDSGNLVLTN GTVSVWSTFE NPTDTIVPTQ NFTTSNSLRS GLYSFSLTKS GNLTLTWNSS ILYWSKGLNS TVDKNLTSPS
201: LGLQSIGILS LSDLTLSTSV VLAYSSDYAE GSDLLRFVRL DSDGNLRIYS SDSGSGISNV RWAAVEDQCE VFGYCGNLGI CSYNDSTPVC GCPSENFELV
301: DPKDSTKGCK RKEEIENCPG DLTMLELQHA KFLTYSSELS SQVFFVGISA CRLNCLVGGS CIASTSLSDG TGLCYLKVPG FVSGYQSPAL PSTSYVKVCG
401: PVVPNPSAFS HGDDGAWKLH AWIVAVVVLG TLAALVLLEG GLWWWCCKNS PKFGGLSAQY ALLEYASGAP VQFSYKELQR STKGFKEKLG AGGFGAVYRG
501: ILANRTIVAV KQLEGIEQGE KQFRMEVATI SSTHHLNLVR LIGFCSEGRH RLLVYEFMKN GSLDTCLFPT EGHSGRLLNW ENRFSIALGT ARGITYLHEE
601: CRDCIVHCDI KPENILLDEN YNAKVSDFGL AKLINPKDHR YRTLTSVRGT RGYLAPEWLA NLPITSKSDV YSYGMVLLEI VSGKRNFEVS AETNRKKFSL
701: WAYEEFEKGN MEGIVDKRLG DQGVDMEQAK RAIQVSFWCI QEQPSQRPMM GKVVQMLEGV TEIERPPAPK AAMEVSAGGT SINVSSNVSA LSTFAASAPA
801: PSSSSSMQNA GFSSIVLGRN VEKSSSSVTG RNVERASSSL LHSEVAPGL

Best Arabidopsis Sequence Match ( AT1G34300.1 )
(BLAST)

001: MAVKTPFLKL LPLLLLLLHF PFSFSTIPLG SVIYASGSNQ NWPSPNSTFS VSFVPSPSPN SFLAAVSFAG SVPIWSAGTV DSRGSLRLHT SGSLRLTNGS
101: GTTVWDSKTD RLGVTSGSIE DTGEFILLNN RSVPVWSSFD NPTDTIVQSQ NFTAGKILRS GLYSFQLERS GNLTLRWNTS AIYWNHGLNS SFSSNLSSPR
201: LSLQTNGVVS IFESNLLGGA EIVYSGDYGD SNTFRFLKLD DDGNLRIYSS ASRNSGPVNA HWSAVDQCLV YGYCGNFGIC SYNDTNPICS CPSRNFDFVD
301: VNDRRKGCKR KVELSDCSGN TTMLDLVHTR LFTYEDDPNS ESFFAGSSPC RANCLSSVLC LASVSMSDGS GNCWQKHPGS FFTGYQWPSV PSTSYVKVCG
401: PVVANTLERA TKGDDNNSKV HLWIVAVAVI AGLLGLVAVE IGLWWCCCRK NPRFGTLSSH YTLLEYASGA PVQFTYKELQ RCTKSFKEKL GAGGFGTVYR
501: GVLTNRTVVA VKQLEGIEQG EKQFRMEVAT ISSTHHLNLV RLIGFCSQGR HRLLVYEFMR NGSLDNFLFT TDSAKFLTWE YRFNIALGTA KGITYLHEEC
601: RDCIVHCDIK PENILVDDNF AAKVSDFGLA KLLNPKDNRY NMSSVRGTRG YLAPEWLANL PITSKSDVYS YGMVLLELVS GKRNFDVSEK TNHKKFSIWA
701: YEEFEKGNTK AILDTRLSED QTVDMEQVMR MVKTSFWCIQ EQPLQRPTMG KVVQMLEGIT EIKNPLCPKT ISEVSFSGNS MSTSHASMFV ASGPTRSSSF
801: SATRSFQTMG ITSSGPASTR ISEGSMLGS

Arabidopsis Description

G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.