Factsheet for VIT_12s0028g01490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0032g00810.t01	Wine grape	cytosol	59.09	36.11
VIT_08s0032g00830.t01	Wine grape	cytosol	30.0	32.35
VIT_12s0028g01450.t01	Wine grape	plasma membrane	58.18	15.24
VIT_12s0028g01460.t01	Wine grape	plasma membrane	61.82	8.75
VIT_12s0028g01530.t01	Wine grape	plasma membrane	54.55	7.13
VIT_12s0028g01640.t01	Wine grape	plasma membrane	42.73	7.08
VIT_12s0028g01280.t01	Wine grape	plasma membrane	53.64	6.85
VIT_12s0028g01430.t01	Wine grape	plasma membrane	49.09	6.76
VIT_12s0028g01270.t01	Wine grape	plasma membrane	63.64	5.68
VIT_11s0016g04840.t01	Wine grape	plasma membrane	20.91	5.11
VIT_12s0028g01630.t01	Wine grape	plastid	39.09	4.81
VIT_12s0028g01650.t01	Wine grape	plasma membrane	35.45	4.63
VIT_12s0028g01520.t01	Wine grape	plasma membrane	54.55	4.54
EES07585	Sorghum	plasma membrane	30.91	3.85
Zm00001d018182_P001	Maize	plasma membrane	30.0	3.7
GSMUA_Achr9P27140_001	Banana	plastid	25.45	3.67
Zm00001d018185_P001	Maize	plasma membrane	29.09	3.63
VIT_04s0008g05500.t01	Wine grape	cytosol, nucleus, plasma membrane	25.45	3.54
TraesCS6A01G331200.1	Wheat	plasma membrane	27.27	3.39
TraesCS6D01G310400.1	Wheat	plasma membrane	27.27	3.37
TraesCS6B01G361900.1	Wheat	plasma membrane	27.27	3.36
HORVU6Hr1G080460.1	Barley	endoplasmic reticulum, plasma membrane	27.27	3.35
Os02t0767400-01	Rice	plasma membrane	25.45	3.09
VIT_11s0016g05440.t01	Wine grape	plasma membrane	22.73	3.08
VIT_16s0050g01920.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	20.0	2.95
VIT_18s0086g00200.t01	Wine grape	cytosol	15.45	2.75
VIT_16s0050g01880.t01	Wine grape	plasma membrane	20.0	2.57
VIT_09s0002g06830.t01	Wine grape	plasma membrane	20.91	2.57
VIT_18s0001g03390.t01	Wine grape	plastid	19.09	2.47
VIT_18s0086g00210.t01	Wine grape	plasma membrane	18.18	2.36

Protein Annotations

ArrayExpress:VIT_12s0028g01490	EMBL:FN595235	EnsemblPlants:VIT_12s0028g01490.t01	EnsemblPlantsGene:VIT_12s0028g01490	Gene3D:1.10.510.10	PANTHER:PTHR27002
PANTHER:PTHR27002:SF178	ProteinID:CCB47413	ProteinID:CCB47413.1	SEG:seg	UniParc:UPI0002109814	UniProt:F6H545
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:2157222..2157608

Molecular Weight (calculated)

12321.1 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.008

Length

110 amino acids

Sequence
(BLAST)

001: MHLLNLFQRK VKEDQMLDLV DKSSEDMQLH GTEVVEMMKL AAWCLQNDIA KRPSMSVVVK VLDGVMDVEG NLDYCFFSPQ VSRAMKAVHN SKDDVVIAST
101: VLPSILSGPR

Best Arabidopsis Sequence Match ( AT4G32300.1 )
(BLAST)

001: MRGVFIVIVT CLVFLPDPLR AGVASIGSIT PGFGGSQMNY INNDGIFLES NNSAFGFGFV TTQDSVTLFT LSIIHKSSTK LIWSANRASP VSNSDKFVFD
101: DNGNVVMEGT EVWRLDNSGK NASRIELRDS GNLVVVSVDG TSIWESFDHP TDTLITNQAF KEGMKLTSSP SSSNMTYALE IKSGDMVLSV NSLTPQVYWS
201: MANARERIIN KDGGVVTSSS LLGNSWRFFD QKQVLLWQFV FSDNKDDNTT WIAVLGNNGV ISFSNLGSGA SAADSSTKIP SDLCGTPEPC GPYYVCSGSK
301: VCGCVSGLSR ARSDCKTGIT SPCKKTKDNA TLPLQLVSAG DGVDYFALGY APPFSKKTDL DSCKEFCHNN CSCLGLFFQN SSGNCFLFDY IGSFKTSGNG
401: GSGFVSYIKI ASTGSGGGDN GEDDGKHFPY VVIIVVVTVF IIAVLIFVAF RIHKRKKMIL EAPQESSEED NFLENLSGMP IRFAYKDLQS ATNNFSVKLG
501: QGGFGSVYEG TLPDGSRLAV KKLEGIGQGK KEFRAEVSII GSIHHLHLVR LRGFCAEGAH RLLAYEFLSK GSLERWIFRK KDGDVLLDWD TRFNIALGTA
601: KGLAYLHEDC DARIVHCDIK PENILLDDNF NAKVSDFGLA KLMTREQSHV FTTMRGTRGY LAPEWITNYA ISEKSDVYSY GMVLLELIGG RKNYDPSETS
701: EKCHFPSFAF KKMEEGKLMD IVDGKMKNVD VTDERVQRAM KTALWCIQED MQTRPSMSKV VQMLEGVFPV VQPPSSSTMG SRLYSSFFKS ISEDGGATTS
801: SGPSDCNSEN YLSAVRLSGP R

Arabidopsis Description

SD25G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.