Factsheet for VIT_04s0008g05500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040074.1-P	Field mustard	cytosol	17.72	78.65
PGSC0003DMT400082723	Potato	endoplasmic reticulum, nucleus, plasma membrane, plastid	63.54	65.03
KRH61766	Soybean	extracellular, plasma membrane	66.46	64.34
KRH52432	Soybean	endoplasmic reticulum, plasma membrane, vacuole	66.33	64.14
Solyc08g059730.1.1	Tomato	plasma membrane	64.81	63.37
KRH05175	Soybean	plasma membrane	64.94	63.18
KRH15882	Soybean	plasma membrane	64.56	62.96
AT4G32300.1	Thale cress	plasma membrane	65.06	62.61
TraesCS7B01G196400.2	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	50.25	61.27
CDX72354	Canola	plasma membrane	63.54	61.0
CDX75235	Canola	endoplasmic reticulum, plasma membrane	62.53	60.99
CDY13481	Canola	plasma membrane	63.29	60.83
Bra023955.1-P	Field mustard	plasma membrane	62.91	60.54
CDY23321	Canola	plasma membrane	62.78	60.05
GSMUA_Achr7P10190_001	Banana	plasma membrane	50.25	57.87
OQU76372	Sorghum	plasma membrane	60.76	57.28
Zm00001d045950_P003	Maize	cytosol, endoplasmic reticulum, plasma membrane	59.49	55.36
TraesCS7D01G231000.1	Wheat	mitochondrion, plasma membrane	58.61	55.05
Os06t0494100-02	Rice	mitochondrion	58.86	55.03
TraesCS7A01G230900.1	Wheat	mitochondrion, plasma membrane	58.23	54.89
HORVU7Hr1G047150.8	Barley	mitochondrion, plasma membrane	58.73	53.46
VIT_09s0002g06830.t01	Wine grape	plasma membrane	59.24	52.23
TraesCS3D01G480200.1	Wheat	mitochondrion	48.73	49.3
TraesCS3A01G091800.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	50.51	48.31
CDY39882	Canola	plasma membrane	50.38	48.01
VIT_11s0016g05440.t01	Wine grape	plasma membrane	45.82	44.58
CDX68834	Canola	plasma membrane	55.06	44.3
VIT_08s0032g00830.t01	Wine grape	cytosol	5.7	44.12
TraesCS3B01G107000.1	Wheat	plasma membrane	47.72	43.58
VIT_12s0028g01450.t01	Wine grape	plasma membrane	22.78	42.86
VIT_08s0032g00810.t01	Wine grape	cytosol	8.86	38.89
VIT_11s0016g04840.t01	Wine grape	plasma membrane	21.52	37.78
VIT_18s0086g00200.t01	Wine grape	cytosol	28.35	36.19
VIT_12s0028g01640.t01	Wine grape	plasma membrane	29.24	34.79
VIT_16s0050g01920.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	31.14	32.98
VIT_12s0028g01430.t01	Wine grape	plasma membrane	33.16	32.79
VIT_18s0086g00210.t01	Wine grape	plasma membrane	34.68	32.27
VIT_12s0028g01530.t01	Wine grape	plasma membrane	34.3	32.19
VIT_16s0050g01880.t01	Wine grape	plasma membrane	34.81	32.09
VIT_12s0028g01460.t01	Wine grape	plasma membrane	31.52	32.05
VIT_12s0028g01280.t01	Wine grape	plasma membrane	32.66	29.97
VIT_12s0028g01650.t01	Wine grape	plasma membrane	31.9	29.93
VIT_12s0028g01630.t01	Wine grape	plastid	32.78	28.97
Bra011337.1-P	Field mustard	plasma membrane	56.2	27.85
VIT_12s0028g01490.t01	Wine grape	cytosol	3.54	25.45
VIT_18s0001g03390.t01	Wine grape	plastid	25.95	24.15
VIT_12s0028g01270.t01	Wine grape	plasma membrane	32.78	21.01
VIT_12s0028g01520.t01	Wine grape	plasma membrane	33.54	20.06

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100242272	wikigene:100242272	MapMan:18.4.1.24.2	Gene3D:2.90.10.10	Gene3D:3.30.200.20	InterPro:Bulb-type_lectin_dom
InterPro:Bulb-type_lectin_dom_sf	ProteinID:CCB46807	ProteinID:CCB46807.1	UniProt:F6H329	EMBL:FN595231	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	InterPro:IPR000719	InterPro:IPR001480
InterPro:IPR003609	InterPro:IPR036426	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242272	wikigene:LOC100242272	PFAM:PF00069
PFAM:PF01453	PIRSF:PIRSF000641	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50927
PFscan:PS50948	PANTHER:PTHR27002	PANTHER:PTHR27002:SF31	InterPro:Pan_app	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00108	SMART:SM00220	InterPro:SRK-like_kinase	SUPFAM:SSF51110	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
TMHMM:TMhelix	UniParc:UPI00015C846D	ArrayExpress:VIT_04s0008g05500	EnsemblPlantsGene:VIT_04s0008g05500	EnsemblPlants:VIT_04s0008g05500.t01	RefSeq:XP_002282684
RefSeq:XP_002282684.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:4952194..4954666

Molecular Weight (calculated)

87385.1 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.326

Length

790 amino acids

Sequence
(BLAST)

001: MASVQRHGKV EPGFEGSQMN WIDNDGHFLL SNNSDFAFGF EATNDVQLFL LVVIHLAAKK IIWTANRGSP VQNSDKFVFD DKGRVFLQKG NRTVWSPDTA
101: GKAVSAIEMQ DSGNLVLVGN EGQPIWQSFD HPTDTLLSYQ NFKEGMKLES DLTNDNISYY LEIKSGNMIL YAGYRTPQPY WSMKKENLKI VEKDGDPVSA
201: SIEGNSWRFY DRNKALLWQF VLSQNGDTNS TWAATLGSDG FISFTTLSDG GISQVQKQIP GDSCSSPGFC EAYYICSSNR CQCPSVLSSR PNCNTGIVSP
301: CKDSTELVNA GDGFNYFAIE FISPSLPDTD LNGCKNSCLS NCSCLASFFK NSTGNCFLFD SVGGLQSTDG QGFAMYIKVS SSGGSDVNPG GDGGGGSKKH
401: FPYVVIIAVS TVLVIIGLVY VGFRYSRRKK SPESPHDHTS EEDNFLESLS GMPIRFSYKD LQTATDNFSV KLGQGGFGSV YRGALPDGTQ LAVKKLEGIG
501: QGKKEFRAEV SIIGSIHHLH LVKLKGFCAE GSHRLLAYEF MANGSLDRWI FRKNREGFML DWNTRFNIAL GTAKGLSYLH EDCDAKIIHC DIKPENVLLD
601: DNYHAKVSDF GLAKLMTREQ SHVFTTLRGT RGYLAPEWIT NYAISEKSDV YSYGMVLLEI IGGRKNYDPS EISEKSHFPT YAFKMMEEGK LRDLLDSRLE
701: VDEEDERVST AIKVAMWCIQ EDMHQRPSMM KVVQMLEGLC AVPQPPTTSQ MGSRFYSGFF KSISEEGTSS GPSDCNSDAY LSAVRLSGPR

Best Arabidopsis Sequence Match ( AT4G32300.1 )
(BLAST)

001: MRGVFIVIVT CLVFLPDPLR AGVASIGSIT PGFGGSQMNY INNDGIFLES NNSAFGFGFV TTQDSVTLFT LSIIHKSSTK LIWSANRASP VSNSDKFVFD
101: DNGNVVMEGT EVWRLDNSGK NASRIELRDS GNLVVVSVDG TSIWESFDHP TDTLITNQAF KEGMKLTSSP SSSNMTYALE IKSGDMVLSV NSLTPQVYWS
201: MANARERIIN KDGGVVTSSS LLGNSWRFFD QKQVLLWQFV FSDNKDDNTT WIAVLGNNGV ISFSNLGSGA SAADSSTKIP SDLCGTPEPC GPYYVCSGSK
301: VCGCVSGLSR ARSDCKTGIT SPCKKTKDNA TLPLQLVSAG DGVDYFALGY APPFSKKTDL DSCKEFCHNN CSCLGLFFQN SSGNCFLFDY IGSFKTSGNG
401: GSGFVSYIKI ASTGSGGGDN GEDDGKHFPY VVIIVVVTVF IIAVLIFVAF RIHKRKKMIL EAPQESSEED NFLENLSGMP IRFAYKDLQS ATNNFSVKLG
501: QGGFGSVYEG TLPDGSRLAV KKLEGIGQGK KEFRAEVSII GSIHHLHLVR LRGFCAEGAH RLLAYEFLSK GSLERWIFRK KDGDVLLDWD TRFNIALGTA
601: KGLAYLHEDC DARIVHCDIK PENILLDDNF NAKVSDFGLA KLMTREQSHV FTTMRGTRGY LAPEWITNYA ISEKSDVYSY GMVLLELIGG RKNYDPSETS
701: EKCHFPSFAF KKMEEGKLMD IVDGKMKNVD VTDERVQRAM KTALWCIQED MQTRPSMSKV VQMLEGVFPV VQPPSSSTMG SRLYSSFFKS ISEDGGATTS
801: SGPSDCNSEN YLSAVRLSGP R

Arabidopsis Description

SD25G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.