Factsheet for PGSC0003DMT400028871

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011307	Potato	cytosol	53.63	60.25
PGSC0003DMT400028879	Potato	extracellular	44.18	59.47
PGSC0003DMT400028417	Potato	cytosol, golgi, plastid	44.62	55.31
PGSC0003DMT400021607	Potato	cytosol	50.99	48.95
PGSC0003DMT400021294	Potato	cytosol	52.53	39.64
PGSC0003DMT400065971	Potato	cytosol	64.84	30.67
PGSC0003DMT400049255	Potato	cytosol	60.22	29.72
PGSC0003DMT400024060	Potato	cytosol	26.81	29.4
PGSC0003DMT400021631	Potato	cytosol	62.64	28.0
PGSC0003DMT400028851	Potato	cytosol	23.74	26.15
PGSC0003DMT400056053	Potato	cytosol	62.42	25.54
PGSC0003DMT400051007	Potato	cytosol	24.62	24.51
PGSC0003DMT400049984	Potato	cytosol	64.4	24.04
PGSC0003DMT400022156	Potato	cytosol	65.05	23.38
PGSC0003DMT400022154	Potato	cytosol	63.3	23.26
PGSC0003DMT400011301	Potato	cytosol	63.96	22.97
PGSC0003DMT400071966	Potato	nucleus	62.64	22.97
PGSC0003DMT400028691	Potato	cytosol	64.84	22.87
PGSC0003DMT400021634	Potato	cytosol	62.86	22.47
PGSC0003DMT400028843	Potato	cytosol	37.36	21.46
PGSC0003DMT400028882	Potato	cytosol	12.53	20.21
PGSC0003DMT400050981	Potato	cytosol	15.16	18.8
PGSC0003DMT400024057	Potato	vacuole	27.25	17.87
PGSC0003DMT400024063	Potato	cytosol	20.66	17.57
PGSC0003DMT400076092	Potato	cytosol	29.67	17.4
PGSC0003DMT400014280	Potato	extracellular, plasma membrane	15.38	16.87
PGSC0003DMT400046505	Potato	plasma membrane	25.93	16.83
PGSC0003DMT400019688	Potato	cytosol, plasma membrane, plastid	21.76	15.64
PGSC0003DMT400033635	Potato	extracellular, plasma membrane, plastid	40.22	14.59
PGSC0003DMT400024123	Potato	plasma membrane	30.99	14.27
PGSC0003DMT400079272	Potato	cytosol, plasma membrane	30.33	13.87
PGSC0003DMT400043956	Potato	cytosol	29.23	13.43
PGSC0003DMT400043963	Potato	endoplasmic reticulum, plasma membrane	28.79	13.41
PGSC0003DMT400022135	Potato	cytosol, plasma membrane	29.89	13.2
PGSC0003DMT400079343	Potato	cytosol	17.8	12.74
PGSC0003DMT400051247	Potato	extracellular, plasma membrane	15.82	12.63
PGSC0003DMT400054250	Potato	cytosol	14.95	12.04
PGSC0003DMT400017461	Potato	cytosol	29.89	11.7
PGSC0003DMT400017408	Potato	cytosol	28.35	11.61
PGSC0003DMT400012963	Potato	cytosol	29.01	11.59
PGSC0003DMT400044170	Potato	cytosol	27.47	11.43
PGSC0003DMT400006336	Potato	cytosol	13.63	11.29
TraesCS7B01G453200.1	Wheat	cytosol, plastid	10.11	11.06
PGSC0003DMT400008029	Potato	cytosol	28.35	10.95
TraesCS7D01G522300.1	Wheat	plasma membrane	12.31	10.73
PGSC0003DMT400079342	Potato	cytosol	16.7	10.51
PGSC0003DMT400079273	Potato	extracellular, plasma membrane	16.26	9.1
PGSC0003DMT400051008	Potato	cytosol	6.15	8.75
PGSC0003DMT400008852	Potato	mitochondrion	2.86	3.49
PGSC0003DMT400043990	Potato	cytosol	2.86	3.45
HORVU1Hr1G000840.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0043531	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1ART8	InterPro:NB-ARC	InterPro:P-loop_NTPase
PFAM:PF00931	EnsemblPlantsGene:PGSC0003DMG400011111	PGSC:PGSC0003DMG400011111	EnsemblPlants:PGSC0003DMT400028871	PRINTS:PR00364	PFscan:PS51450
PANTHER:PTHR23155	PANTHER:PTHR23155:SF877	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI0002964459	SEG:seg

Description

Cc-nbs-lrr resistance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011111]

Coordinates

chr10:+:53582695..53588282

Molecular Weight (calculated)

51184.4 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.246

Length

455 amino acids

Sequence
(BLAST)

001: MLRDELTGRK YLLVLDDLWH VNPLLWHDIL NTLRGINTSR GNFILVTTRM ELVASIVTTI GPHMLEKLAK DHCWSIFRQS AFVVGEVPEE MLSMKNKIVE
101: MCQGLPLAAT VLGGLLGNKD KHEWQAILDG NPLVAGENSI MKILKLSYDY LPSPHLKKCF GYFAMFPKDF EFEKEQLIQL WMAEGFLCPS QEIPVMEDVG
201: NKFFQHLLKY SLLQDFELDE HNNITHCNMH DLAGDTLKSK LFDTKSVGGE NLSQARYFGW DSPSDQVDTM NEFLRVLNLS GSGIKELSVK ISKLIYLRYL
301: DLSNTQIEDF PNSICKLYNL QTFRVNDFSS LRKLPREMAS GTHGHHPRTV DGLTVRPAGQ VTDRSSCPWI DAPKAQLQSR TTVDQHVPSF DPRSVGLTVD
401: EARSANARNA NAVPLVPDQE VLNTEFRNAN SAFGSCMTNV PVPTNRNGGS VAARV

Best Arabidopsis Sequence Match ( AT3G14470.1 )
(BLAST)

0001: MTGIGEMFLA AFLQALFQTL VSEPFRSFFK RRELNENLLE RLSTALLTIT AVLIDAEEKQ ITNPVVEKWV NELRDVVYHA EDALDDIATE ALRLNIGAES
0101: SSSNRLRQLR GRMSLGDFLD GNSEHLETRL EKVTIRLERL ASQRNILGLK ELTAMIPKQR LPTTSLVDES EVFGRDDDKD EIMRFLIPEN GKDNGITVVA
0201: IVGIGGVGKT TLSQLLYNDQ HVRSYFGTKV WAHVSEEFDV FKITKKVYES VTSRPCEFTD LDVLQVKLKE RLTGTGLPFL LVLDDLWNEN FADWDLLRQP
0301: FIHAAQGSQI LVTTRSQRVA SIMCAVHVHN LQPLSDGDCW SLFMKTVFGN QEPCLNREIG DLAERIVHKC RGLPLAVKTL GGVLRFEGKV IEWERVLSSR
0401: IWDLPADKSN LLPVLRVSYY YLPAHLKRCF AYCSIFPKGH AFEKDKVVLL WMAEGFLQQT RSSKNLEELG NEYFSELESR SLLQKTKTRY IMHDFINELA
0501: QFASGEFSSK FEDGCKLQVS ERTRYLSYLR DNYAEPMEFE ALREVKFLRT FLPLSLTNSS RSCCLDQMVS EKLLPTLTRL RVLSLSHYKI ARLPPDFFKN
0601: ISHARFLDLS RTELEKLPKS LCYMYNLQTL LLSYCSSLKE LPTDISNLIN LRYLDLIGTK LRQMPRRFGR LKSLQTLTTF FVSASDGSRI SELGGLHDLH
0701: GKLKIVELQR VVDVADAAEA NLNSKKHLRE IDFVWRTGSS SSENNTNPHR TQNEAEVFEK LRPHRHIEKL AIERYKGRRF PDWLSDPSFS RIVCIRLREC
0801: QYCTSLPSLG QLPCLKELHI SGMVGLQSIG RKFYFSDQQL RDQDQQPFRS LETLRFDNLP DWQEWLDVRV TRGDLFPSLK KLFILRCPEL TGTLPTFLPS
0901: LISLHIYKCG LLDFQPDHHE YSYRNLQTLS IKSSCDTLVK FPLNHFANLD KLEVDQCTSL YSLELSNEHL RGPNALRNLR INDCQNLQLL PKLNALPQNL
1001: QVTITNCRYL RQPMEQQPQY HHPQFHLPRS NVSGSPKSHG SHRSYDSRSS SRYD

Arabidopsis Description

RPPL1Putative disease resistance RPP13-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.