Factsheet for PGSC0003DMT400038362

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076620.1.1	Tomato	extracellular, plasma membrane	84.59	66.74
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	70.06	56.57
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	70.35	54.88
PGSC0003DMT400092749	Potato	cytosol	22.09	41.53
PGSC0003DMT400063081	Potato	extracellular, vacuole	48.55	38.22
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	48.26	38.07
PGSC0003DMT400023193	Potato	plasma membrane	42.44	33.95
PGSC0003DMT400023192	Potato	extracellular	41.86	33.64
PGSC0003DMT400023183	Potato	extracellular	42.44	33.41
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	42.44	32.59
PGSC0003DMT400023190	Potato	extracellular, vacuole	40.99	32.05
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	40.41	32.03
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	38.08	30.39
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	39.24	30.07
PGSC0003DMT400083215	Potato	extracellular	35.47	29.33
PGSC0003DMT400095550	Potato	mitochondrion	40.12	28.81
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	31.4	27.27
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	33.14	26.51
PGSC0003DMT400023184	Potato	extracellular, vacuole	31.69	24.55

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109
InterPro:IPR033121	UniProt:M1B6Q8	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG400014802
PGSC:PGSC0003DMG400014802	EnsemblPlants:PGSC0003DMT400038362	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF532	InterPro:Peptidase_aspartic_dom_sf
SUPFAM:SSF50630	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI0002964065	:	:

Description

EDGP [Source:PGSC_GENE;Acc:PGSC0003DMG400014802]

Coordinates

chr8:+:49207375..49208409

Molecular Weight (calculated)

38578.6 Da

IEP (calculated)

9.975

GRAVY (calculated)

-0.061

Length

344 amino acids

Sequence
(BLAST)

001: MQSRKINSLR RLCYRKYNSS RLQRQCVRDN IVSNPAMNIF YSGGEIAEDV LTIQSINGSI PGPQSRGPVV TVSNFIFSCS PSYYTQNLGK NVKGMIGFGQ
101: QSPVSFVTQL ASAFKFSRQF AICLSSSTQQ NGIIFIGHRP YIFALGFDAS RDLIYTPIIT YPSFFFINRG SPEYYIQVTS ITINEKTLAL NKTLLSLDEN
201: EEKGTKISTA VPYTVLEPSI YNVVRKAFIS EMPKDVKTVA AVQPFKTCFD STYVGMSRLG YNAPKIDLVL HKPNVRWTIT GANSLVKVSE RVVCLAFVER
301: NHTFGQAIII GGFQMQDNLV EFDLARRRIG FSKSLLFRQT TCSN

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.