Factsheet for PGSC0003DMT400095550

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079970.2.1	Tomato	extracellular, plasma membrane	83.51	90.09
PGSC0003DMT400092749	Potato	cytosol	32.36	84.7
PGSC0003DMT400023190	Potato	extracellular, vacuole	74.95	81.59
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	76.2	81.47
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	54.07	57.68
PGSC0003DMT400023183	Potato	extracellular	50.1	54.92
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	48.02	52.75
PGSC0003DMT400063081	Potato	extracellular, vacuole	47.81	52.4
PGSC0003DMT400023184	Potato	extracellular, vacuole	46.14	49.77
HORVU1Hr1G061380.1	Barley	extracellular, golgi	43.84	48.84
TraesCS1A01G251900.1	Wheat	endoplasmic reticulum, extracellular	43.63	48.05
TraesCS1B01G263100.1	Wheat	endoplasmic reticulum, extracellular	43.42	47.82
TraesCS1D01G251700.1	Wheat	extracellular, golgi	43.42	47.71
Os05t0403100-00	Rice	extracellular	34.45	47.28
Os05t0402900-01	Rice	extracellular	43.01	47.14
Zm00001d038151_P001	Maize	extracellular	42.59	46.58
Os05t0403000-01	Rice	extracellular	41.75	45.77
OQU77960	Sorghum	endoplasmic reticulum, extracellular	42.59	45.33
Os05t0403300-01	Rice	golgi	41.75	43.96
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	38.2	42.17
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	37.37	42.02
PGSC0003DMT400023192	Potato	extracellular	36.53	40.89
PGSC0003DMT400023193	Potato	plasma membrane	36.12	40.23
PGSC0003DMT400038362	Potato	mitochondrion	28.81	40.12
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	36.12	39.23
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	32.15	38.89
PGSC0003DMT400083215	Potato	extracellular	32.78	37.74
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	33.82	37.67
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	33.82	37.59

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109
InterPro:IPR033121	UniProt:M1DWJ7	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG400045121
PGSC:PGSC0003DMG400045121	EnsemblPlants:PGSC0003DMT400095550	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF532	InterPro:Peptidase_aspartic_dom_sf
SUPFAM:SSF50630	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI000296D0E3	InterPro:Xylanase_inhibitor_I-like	SEG:seg

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400045121]

Coordinates

chr1:-:61822152..61824316

Molecular Weight (calculated)

51848.4 Da

IEP (calculated)

9.098

GRAVY (calculated)

0.009

Length

479 amino acids

Sequence
(BLAST)

001: MFSSRVLGQG RVSGRNISRV GCWGWIALQK LDLELNVAVG SQSWVSGWVQ ARVLGSCPDS AKTPPRPRAF LLPVTKDAST KQYVTTIYQR TPLVPVKLTI
101: DLGQRFLWVD CEKGYVSKSY KPVRCGSIPC KRSLSGACVE SCVGPPSPGC NNNTCSHTPY NPFIRTSTGG ELAQDVVSLQ STDGSNPRKY LSTNGVVFDC
201: APHSLLEGLA KGVKGILGLG NGYVGFPTQL ANAFSVPRKF AICLTSSTTS RGVIFFGDSP YVFLPGMDYS KRLVYTPLLK NPVSTSGSYY EGEPSTDYFI
301: GVAFIKIHSI VVPINTTLLN ITKDGKGGTK ISTVEPYTKL ETSIYNALTK AFVGALANVP MMKPVAPFKV CYNKTSLGSN QVGPGVPPIE LVLRNKNATT
401: YTSWFIWGAN SMVTVNNDVV CFGFVDGGVE FEPTSIVIGT HQIEDNLLQF DIANKRLGFT SSLLFDEITC ANFNFTTKA

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.