Factsheet for PGSC0003DMT400092749

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	96.72	39.51
Solyc01g079960.2.1	Tomato	plasma membrane	94.54	39.23
PGSC0003DMT400023190	Potato	extracellular, vacuole	92.35	38.41
PGSC0003DMT400095550	Potato	mitochondrion	84.7	32.36
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	68.31	27.84
Os05t0403100-00	Rice	extracellular	49.73	26.07
PGSC0003DMT400023183	Potato	extracellular	60.11	25.17
HORVU1Hr1G061380.1	Barley	extracellular, golgi	57.38	24.42
TraesCS1B01G263100.1	Wheat	endoplasmic reticulum, extracellular	56.83	23.91
TraesCS1A01G251900.1	Wheat	endoplasmic reticulum, extracellular	56.83	23.91
Zm00001d038151_P001	Maize	extracellular	56.83	23.74
TraesCS1D01G251700.1	Wheat	extracellular, golgi	56.28	23.62
Os05t0402900-01	Rice	extracellular	55.74	23.34
OQU77960	Sorghum	endoplasmic reticulum, extracellular	56.83	23.11
Os05t0403300-01	Rice	golgi	57.38	23.08
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	54.64	22.94
Os05t0403000-01	Rice	extracellular	54.64	22.88
PGSC0003DMT400063081	Potato	extracellular, vacuole	53.55	22.43
PGSC0003DMT400038362	Potato	mitochondrion	41.53	22.09
PGSC0003DMT400023184	Potato	extracellular, vacuole	51.91	21.4
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	46.99	20.0
PGSC0003DMT400023193	Potato	plasma membrane	42.62	18.14
PGSC0003DMT400023192	Potato	extracellular	41.53	17.76
PGSC0003DMT400083215	Potato	extracellular	39.89	17.55
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	41.53	17.51
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	39.89	17.14
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	40.44	16.78
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	37.7	16.01
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	28.96	13.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400092749	EnsemblPlantsGene:PGSC0003DMG400042320	Gene3D:2.40.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:Aspartic_peptidase_A1
InterPro:IPR021109	InterPro:Peptidase_aspartic_dom_sf	InterPro:TAXi_C	PANTHER:PTHR13683	PANTHER:PTHR13683:SF532	PFAM:PF14541
PGSC:PGSC0003DMG400042320	SUPFAM:SSF50630	UniParc:UPI000294F4C3	UniProt:M1DQG6	MapMan:19.4.3.1	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400042320]

Coordinates

chr1:-:61837182..61837733

Molecular Weight (calculated)

19637.8 Da

IEP (calculated)

9.045

GRAVY (calculated)

0.114

Length

183 amino acids

Sequence
(BLAST)

001: MDVSKRLVYT PLLKNPVSTS GSYFEGEPSV DYFIGVTSIK INGNVVPINT TLLNITKDGK GGTKISTVDP YTKLETSIYN ALTKAFVKSL AKVPRVKPVA
101: PFKVCYNRTS LGSTRVGPGV PPIELVLGNK NATTSWTIWG VNSMVAMNND VLCLGFVDGG VEFEPTTSIV IGAHQIEDNL LAI

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.