Factsheet for PGSC0003DMT400023203

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	85.35	77.88
Solyc01g079900.1.1	Tomato	cytosol, plastid	27.53	54.23
PGSC0003DMT400023193	Potato	plasma membrane	57.58	53.02
PGSC0003DMT400023192	Potato	extracellular	55.05	50.93
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	41.67	38.73
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	41.16	37.39
PGSC0003DMT400063081	Potato	extracellular, vacuole	40.4	36.61
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	40.66	36.51
PGSC0003DMT400023190	Potato	extracellular, vacuole	39.14	35.23
PGSC0003DMT400023183	Potato	extracellular	37.63	34.1
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	38.13	33.71
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	37.12	32.74
PGSC0003DMT400095550	Potato	mitochondrion	38.89	32.15
PGSC0003DMT400038362	Potato	mitochondrion	27.27	31.4
PGSC0003DMT400023184	Potato	extracellular, vacuole	34.09	30.41
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	32.07	29.47
PGSC0003DMT400092749	Potato	cytosol	13.38	28.96
PGSC0003DMT400083215	Potato	extracellular	30.05	28.61
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	25.51	23.49

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	InterPro:GAG-pre-integrase_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR021109	UniProt:M1AHY7	PFAM:PF13976
PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG401008987	PGSC:PGSC0003DMG401008987	EnsemblPlants:PGSC0003DMT400023203	PANTHER:PTHR13683
PANTHER:PTHR13683:SF268	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix
UniParc:UPI000296F22C	SEG:seg	:	:	:	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401008987]

Coordinates

chr1:+:61910506..61914471

Molecular Weight (calculated)

43091.4 Da

IEP (calculated)

9.633

GRAVY (calculated)

0.136

Length

396 amino acids

Sequence
(BLAST)

001: MLTSKFSSSS NIYTFILLFL LLNIISLCSS IVLPTTLILP VTKDSSTLQY ITVIGQRTPL IPVNFTVHLG SASLLVDCES GYNSSTYKPV LCESKQCSFA
101: KAEFNACGSI CLSKPRPGCN NNTCHTFDGN PIIDTYTGAE LAEDVLAIGS KPVVLVSQPK FIFTCIRSFI MTHLAKGVTG IAGFGHNSTI SIPNQLASLD
201: SKFTNKFGIC LSSSTRSSGV IFIGSTPYYV YNPMIDISKN LVYTPLVKNT FTTSKFSEYH VKVSSIRIAG KNVPLNKTLL SIKQGLGGTR ISTTTAFTIL
301: HTTIYDAVKT AFINALPKNV TIVEPPTKQF GLCFSMIGQN SETSGTALSA GHDKPEYIKT RCHSVLVEKS KNKTDIDLWH RRLGHAPLNT LKKLKI

Best Arabidopsis Sequence Match ( AT1G03220.1 )
(BLAST)

001: MAPSPIIFSV LLLFIFSLSS SAQTPFRPKA LLLPVTKDQS TLQYTTVINQ RTPLVPASVV FDLGGRELWV DCDKGYVSST YQSPRCNSAV CSRAGSTSCG
101: TCFSPPRPGC SNNTCGGIPD NTVTGTATSG EFALDVVSIQ STNGSNPGRV VKIPNLIFDC GATFLLKGLA KGTVGMAGMG RHNIGLPSQF AAAFSFHRKF
201: AVCLTSGKGV AFFGNGPYVF LPGIQISSLQ TTPLLINPVS TASAFSQGEK SSEYFIGVTA IQIVEKTVPI NPTLLKINAS TGIGGTKISS VNPYTVLESS
301: IYNAFTSEFV KQAAARSIKR VASVKPFGAC FSTKNVGVTR LGYAVPEIEL VLHSKDVVWR IFGANSMVSV SDDVICLGFV DGGVNARTSV VIGGFQLEDN
401: LIEFDLASNK FGFSSTLLGR QTNCANFNFT STA

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVS4]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.