Factsheet for PGSC0003DMT400083215

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19120.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G19120.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080020.2.1	Tomato	extracellular, plasma membrane	95.19	94.96
VIT_05s0020g02720.t01	Wine grape	extracellular, plasma membrane	43.75	49.73
KRH51036	Soybean	plasma membrane, vacuole	46.15	46.38
KRH02113	Soybean	endoplasmic reticulum, vacuole	47.6	45.83
KRH20901	Soybean	vacuole	40.38	41.69
KRH11388	Soybean	plasma membrane, vacuole	40.14	41.44
PGSC0003DMT400023183	Potato	extracellular	43.27	41.19
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	42.31	40.37
PGSC0003DMT400063081	Potato	extracellular, vacuole	42.31	40.27
PGSC0003DMT400092749	Potato	cytosol	17.55	39.89
AT5G19120.1	Thale cress	endoplasmic reticulum, vacuole	35.58	38.34
PGSC0003DMT400023190	Potato	extracellular, vacuole	39.9	37.73
CDX92553	Canola	endoplasmic reticulum, vacuole	33.89	37.11
CDX88901	Canola	extracellular	34.38	36.95
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	39.66	36.83
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	39.66	36.75
CDY59021	Canola	endoplasmic reticulum, extracellular, plasma membrane	34.13	36.69
CDX70865	Canola	extracellular	34.38	36.57
PGSC0003DMT400023192	Potato	extracellular	37.5	36.45
Bra002214.1-P	Field mustard	endoplasmic reticulum, extracellular	33.41	36.29
CDY13979	Canola	endoplasmic reticulum, vacuole	33.41	36.29
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	36.78	35.92
PGSC0003DMT400038362	Potato	mitochondrion	29.33	35.47
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	37.26	35.15
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	36.54	35.02
PGSC0003DMT400023193	Potato	plasma membrane	36.06	34.88
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	36.06	34.8
PGSC0003DMT400023184	Potato	extracellular, vacuole	37.02	34.68
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	34.38	33.26
PGSC0003DMT400095550	Potato	mitochondrion	37.74	32.78
CDY72428	Canola	extracellular	10.34	32.33
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	28.61	30.05

Protein Annotations

EntrezGene:102595370	MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
InterPro:IPR021109	InterPro:IPR033121	UniProt:M1D6Q2	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543
EnsemblPlantsGene:PGSC0003DMG400033123	PGSC:PGSC0003DMG400033123	EnsemblPlants:PGSC0003DMT400083215	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF553
InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI00029588F6
RefSeq:XP_006339396.1	SEG:seg	:	:	:	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400033123]

Coordinates

chr1:+:61708127..61709740

Molecular Weight (calculated)

45147.6 Da

IEP (calculated)

5.970

GRAVY (calculated)

0.181

Length

416 amino acids

Sequence
(BLAST)

001: MASLVQFLPL FPFFFLISFS VSHGPFLPKA IILPVNKDPS TFQYVTQLYM GANHLAPIKL VVNLGGSFLW ADCGLTSDSS SQKLVPCNSL KCSMAKPNGC
101: TNDNKICGLK SENPFTRLAA TGELAEDMFA VEFIDELKTG SVASIHQFLF SCTSSTLLQG LARGAKGMLG LGNSRIALPS QLSDTFGFQR KFAICLSSSN
201: GAIISGESPY LSLLSHDVSR SMLYTPLISS RDGVLEEYYI NVKSLKINGN KLSLNTSLLT MDGEGHGGTK ISTISPFTTM KTSIYKTFVE SYERFGFSMG
301: LTKVEPIAPF GLCFSTKVEG LNVPSIDLVL QSEMVKWRIY ESNSMVKVSD EVMCLGFLDG GVNQKASIVI GGHQLEDNLL EFNLGTSMLG FTSSLAMVET
401: SCSDFMFTKD SSVFDT

Best Arabidopsis Sequence Match ( AT5G19120.1 )
(BLAST)

001: MASSSCLNLF FFSFLSALII SKSQISDSVN GVVFPVVKDL PTGQYLAQIR LGDSPDPVKL VVDLAGSILW FDCSSRHVSS SRNLISGSSS GCLKAKVGNE
101: RVSSSSSSRK DQNADCELLV KNDAFGITAR GELFSDVMSV GSVTSPGTVD LLFACTPPWL LRGLASGAQG VMGLGRAQIS LPSQLAAETN ERRRLTVYLS
201: PLNGVVSTSS VEEVFGVAAS RSLVYTPLLT GSSGNYVINV KSIRVNGEKL SVEGPLAVEL STVVPYTILE SSIYKVFAEA YAKAAGEATS VPPVAPFGLC
301: FTSDVDFPAV DLALQSEMVR WRIHGKNLMV DVGGGVRCSG IVDGGSSRVN PIVMGGLQLE GFILDFDLGN SMMGFGQRTR SDSTSL

Arabidopsis Description

AT5g19120/T24G5_20 [Source:UniProtKB/TrEMBL;Acc:Q93VG3]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.