Factsheet for PGSC0003DMT400023187

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 7
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079990.1.1	Tomato	plastid	64.37	95.7
PGSC0003DMT400092749	Potato	cytosol	27.84	68.31
PGSC0003DMT400023190	Potato	extracellular, vacuole	61.69	62.95
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	62.14	62.28
PGSC0003DMT400095550	Potato	mitochondrion	57.68	54.07
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	51.0	52.52
PGSC0003DMT400063081	Potato	extracellular, vacuole	50.78	52.17
PGSC0003DMT400023183	Potato	extracellular	48.33	49.66
HORVU1Hr1G061380.1	Barley	extracellular, golgi	46.55	48.6
TraesCS1B01G263100.1	Wheat	endoplasmic reticulum, extracellular	46.1	47.59
TraesCS1A01G251900.1	Wheat	endoplasmic reticulum, extracellular	46.1	47.59
TraesCS1D01G251700.1	Wheat	extracellular, golgi	45.66	47.02
Os05t0402900-01	Rice	extracellular	45.21	46.45
Os05t0403100-00	Rice	extracellular	36.08	46.42
Zm00001d038151_P001	Maize	extracellular	44.99	46.12
OQU77960	Sorghum	endoplasmic reticulum, extracellular	46.1	46.0
Os05t0403000-01	Rice	extracellular	44.32	45.54
PGSC0003DMT400023184	Potato	extracellular, vacuole	44.32	44.82
Os05t0403300-01	Rice	golgi	43.43	42.86
PGSC0003DMT400023204	Potato	endoplasmic reticulum, vacuole	40.31	41.71
PGSC0003DMT400023192	Potato	extracellular	39.64	41.59
PGSC0003DMT400023193	Potato	plasma membrane	39.42	41.16
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	37.64	39.67
PGSC0003DMT400083215	Potato	extracellular	36.75	39.66
PGSC0003DMT400038362	Potato	mitochondrion	30.07	39.24
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	38.31	39.0
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	32.74	37.12
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	35.41	36.89
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	34.97	36.51

Protein Annotations

EntrezGene:102590526	MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538
InterPro:IPR021109	InterPro:IPR033121	UniProt:M1AHY0	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543
EnsemblPlantsGene:PGSC0003DMG400008980	PGSC:PGSC0003DMG400008980	EnsemblPlants:PGSC0003DMT400023187	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF532
InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI000295CBE2
RefSeq:XP_006349246.1	InterPro:Xylanase_inhibitor_I-like	SEG:seg	:	:	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400008980]

Coordinates

chr1:+:61791999..61793529

Molecular Weight (calculated)

47853.8 Da

IEP (calculated)

8.147

GRAVY (calculated)

0.080

Length

449 amino acids

Sequence
(BLAST)

001: MASTHIPLSL FLTLLLLFIS SSTAQPVKRR ALLPVTKDVA TKQYVTLINQ RTPLVPIKLT VDLGGRFIWV DCQNGYVSST LTPLICDTLF CRLSHSGACD
101: GNCTGSSPGH PNKDCTCSHL AYNPVSRTST GTGLNEDVIT IQDTDGLKPG PYLKPGKVVF GCADTSLLKG LAKGVKGIAG FGNGYVAIPN QLVYRFSRPR
201: KIGLCLSSST NSPGVIFIGE GPYVLLPNID VSKNLLYTPL LINPISTAGS SFGGEPSTDY FIGVKSIKVN GDLVPINNLL LEINEENGQG GTKISTIDPY
301: TKLESSIYKA LVKAFVHSLT IPRVKKVAPF EMCYKSSSLP STRVGPGVPN IEFVLQGKNG ETPSFIISGA NSMVAVTDEV LCLGFVNGGE NPTTSIVIGG
401: HQIEDNLVQI DIDNKRVGFS NSLLFQQTTC ANFNFGATQG QDVGGREIV

Best Arabidopsis Sequence Match ( AT5G48430.1 )
(BLAST)

001: MEKSLLVLCL ILFFTYSYVS ANYYPPKALV STVSKNTILP IFTFTLNTNQ EFFIHIGGPY LVRKCNDGLP RPIVPCGSPV CALTRRFTPH QCSLPSNKII
101: NGVCACQATA FEPFQRICNS DQFTYGDLSI SSLKPISPSV TINNVYYLCI PQPFLVDFPP GVFGLAGLAP TALATWNQLT RPRLGLEKKF ALCLPSDENP
201: LKKGAIYFGG GPYKLRNIDA RSMLSYTRLI TNPRKLNNYF LGLKGISVNG NRILFAPNAF AFDRNGDGGV TLSTIFPFTM LRSDIYRVFI EAFSQATSGI
301: PRVSSTTPFE FCLSTTTNFQ VPRIDLELAN GVIWKLSPAN AMKKVSDDVA CLAFVNGGDA AAQAVMIGIH QMENTLVEFD VGRSAFGFSS SLGLVSASCG
401: DFQTRP

Arabidopsis Description

At5g48430 [Source:UniProtKB/TrEMBL;Acc:Q9LV70]
SUBAcon: [extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.