Factsheet for PGSC0003DMT400023204

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079900.1.1	Tomato	cytosol, plastid	42.4	91.54
PGSC0003DMT400023203	Potato	plasma membrane, vacuole	77.88	85.35
PGSC0003DMT400023193	Potato	plasma membrane	68.66	69.3
PGSC0003DMT400023192	Potato	extracellular	66.59	67.52
PGSC0003DMT400063080	Potato	endoplasmic reticulum, extracellular	47.0	46.79
PGSC0003DMT400063081	Potato	extracellular, vacuole	46.77	46.45
PGSC0003DMT400045193	Potato	endoplasmic reticulum, extracellular	45.39	46.24
PGSC0003DMT400045232	Potato	plasma membrane, vacuole	44.01	43.31
PGSC0003DMT400023190	Potato	extracellular, vacuole	43.09	42.5
PGSC0003DMT400023183	Potato	extracellular	42.17	41.88
PGSC0003DMT400092749	Potato	cytosol	17.51	41.53
PGSC0003DMT400094021	Potato	plasma membrane, plastid, vacuole	42.86	41.52
PGSC0003DMT400038362	Potato	mitochondrion	32.03	40.41
PGSC0003DMT400023187	Potato	extracellular, plasma membrane	41.71	40.31
PGSC0003DMT400095550	Potato	mitochondrion	42.17	38.2
PGSC0003DMT400073646	Potato	endoplasmic reticulum, vacuole	36.87	37.12
PGSC0003DMT400083215	Potato	extracellular	35.02	36.54
PGSC0003DMT400023184	Potato	extracellular, vacuole	36.18	35.36
PGSC0003DMT400003025	Potato	endoplasmic reticulum, plasma membrane	31.34	31.63

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	ProteinID:AED02502	ProteinID:AED02502.1	ProteinID:AEG74550	ProteinID:AEG74550.1
InterPro:Aspartic_peptidase_A1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR021109	InterPro:IPR033121	EMBL:JF792524	EMBL:JF826497	UniProt:M1AHY8	InterPro:PEPTIDASE_A1
PFAM:PF14541	PFAM:PF14543	EnsemblPlantsGene:PGSC0003DMG402008987	PGSC:PGSC0003DMG402008987	EnsemblPlants:PGSC0003DMT400023204	PFscan:PS51767
PANTHER:PTHR13683	PANTHER:PTHR13683:SF268	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	InterPro:TAXi_C	InterPro:TAXi_N
TMHMM:TMhelix	UniParc:UPI0002961EEA	SEG:seg	:	:	:

Description

Basic 7S globulin 2 small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402008987]

Coordinates

chr1:+:61923310..61925042

Molecular Weight (calculated)

47274.5 Da

IEP (calculated)

9.231

GRAVY (calculated)

0.178

Length

434 amino acids

Sequence
(BLAST)

001: MLTFKFSSSS NICTFILLFL LLNIISLCSS IVLPTTLILP VTKDSSTLQY ITVIGQRTPL IPVKFTVHLG GASLLVDCES GYNSSTYKPV LCKSKQCSFA
101: KAESNACGNF CLSKPRPGCN NNTCHTLDGN PIIDTYTGAE LAEDVLAIGS KPVVLVSQPK FIFTCIESFI MTHLAKGVTG IAGFGHNSTI SIPNQLASLD
201: SKFTNKFGIC LSSSTRSSGV IFIGSTPYYV YNPMIDISKN LVYTPLVKNT FTTSKFSEYH VKVSSIRIAG KNVPLNKTLL SIKQGLGGTR ISTTTAFTIL
301: HTTIYDAVKT AFINALPKNV TIVEPPTKQF GLCFSSKNIR NTNVGPDVPV IDIVFHKKSA FWRIYGTNSV VQVNKDVMCL AFVGQDQTRA PSIEIGGYQL
401: EENLLLFDLI EKKIGFSSSL KLQQTSCSKY EKTS

Best Arabidopsis Sequence Match ( AT5G19100.1 )
(BLAST)

001: MAPRVIFLLL SLVFLYLANT SHSLRKFQSF LHPIYKDTAK NIYTIPLSIG STSSEKFVLD LNGAAPLLQN CPTAAKSTTY HPIRCGSTRC KYANPNFPCP
101: NNVIAKKRTV CLSSDNSRLF RDTVPLLYTF NGVYTRDSEM SSSLTLTCTD GAPALKQRTI GLANTHLSIP SQLISMYQLP HKIALCLPST ERSQSHNGDL
201: WIGKGEYYYL PYDKDVSKIF ASTPLIGNGK SGEYLIDVKS IQIGAKTVPI PYGATKISTL APYTVFQTSL YKALLTAFTE NIKIAKAPAV KPFGACFYSN
301: GGRGVPVIDL VLSGGAKWRI YGSNSLVKVN KNVVCLGFVD GGVKPKYPIV IGGFQMEDNL VEFDLEASKF SFSSSLLLHN TSCSVQRLSP F

Arabidopsis Description

Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q3E9C8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.