Factsheet for PGSC0003DMT400049076

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010041	Potato	extracellular, plasma membrane, vacuole	81.28	97.18
Solyc08g079430.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	96.53	96.53
CDY04405	Canola	cytosol	26.63	75.59
AT4G12280.1	Thale cress	cytosol	31.21	75.0
TraesCS2A01G076300.1	Wheat	cytosol	46.19	73.51
VIT_02s0025g04560.t01	Wine grape	extracellular, golgi, vacuole	73.37	72.76
KRH13980	Soybean	extracellular, golgi, vacuole	68.1	67.08
AT4G12290.1	Thale cress	extracellular, plasma membrane	68.65	66.8
KRH32975	Soybean	extracellular, golgi, vacuole	67.68	66.48
CDX97351	Canola	extracellular, plasma membrane	66.99	65.01
Bra018469.1-P	Field mustard	extracellular, plasma membrane	66.85	64.87
CDY04409	Canola	extracellular, plasma membrane	66.71	64.74
HORVU2Hr1G012710.4	Barley	extracellular	51.18	62.86
TraesCS2D01G075000.1	Wheat	golgi	63.11	62.07
TraesCS2B01G091300.1	Wheat	golgi	63.11	62.07
CDX97353	Canola	cytosol	34.95	61.76
Zm00001d025103_P001	Maize	extracellular, golgi, vacuole	61.16	59.27
EES10538	Sorghum	extracellular, golgi	61.58	59.04
PGSC0003DMT400034947	Potato	cytosol	11.51	56.08
AT4G12270.1	Thale cress	extracellular, vacuole	35.51	55.65
PGSC0003DMT400044197	Potato	extracellular, golgi	42.86	47.25
PGSC0003DMT400044305	Potato	extracellular, golgi, vacuole	42.3	46.42
PGSC0003DMT400081437	Potato	extracellular, plasma membrane	38.42	42.88
PGSC0003DMT400077342	Potato	endoplasmic reticulum, extracellular, plasma membrane	38.14	42.83
GSMUA_Achr8P19360_001	Banana	extracellular, golgi	19.42	42.55
Os04t0269600-01	Rice	extracellular, golgi	18.03	38.46
PGSC0003DMT400069411	Potato	plastid	23.99	25.07
PGSC0003DMT400059626	Potato	peroxisome	26.91	24.68

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
EntrezGene:102591556	Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:8.5.1	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C
InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308
GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	InterPro:IPR036460	UniProt:M1BN80
PFAM:PF01179	PFAM:PF02727	PFAM:PF02728	EnsemblPlantsGene:PGSC0003DMG400019077	PGSC:PGSC0003DMG400019077	EnsemblPlants:PGSC0003DMT400049076
ScanProsite:PS01164	ScanProsite:PS01165	PANTHER:PTHR10638	PANTHER:PTHR10638:SF38	SUPFAM:SSF49998	SUPFAM:SSF54416
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002950CEC	RefSeq:XP_006367888.1	SEG:seg	:

Description

Primary amine oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400019077]

Coordinates

chr8:-:53010749..53015606

Molecular Weight (calculated)

81577.9 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.279

Length

721 amino acids

Sequence
(BLAST)

001: MEGRNLFFLT SIILLLIFTF LNLPSPLSHT TDQLFDCTTY SPWCSSKKPF FLRQPENSKN HYADFPNHPL DPLTIGEIQK VKKIVNSIAE FRMKGCVLHS
101: VVLEEPEKEV VLNWRKGHRL PPRKAAVVAR ALGVVHVLSV DIETGRVTRR ETGSYSGYPI MTIEDMITAT SAPFASSDFN RSIIQRGVDL ADLACLPIST
201: GWYGKIEEKR RVIKVQCYTL KDTINFYMRP IEGLTVLLDL DTQQVMEIID EGKSIPIPKA ANTDYRYSRI KKNTQKINLL KPISIEQPNG PSFTIENNHL
301: VKWANWEFHL KPDPRAGVII SRAMVQDPDT GKMRNVMYKG FTSELFVPYM DPSDAWYFKT YMDAGEYGFG LQAMPLDPLN DCPRNAYYMD GVFVAADGTP
401: YVRSNMICVF ERYAGDIGWR HAECPITGLP IREVRPKVTL VVRMAASVAN YDYIVDWEFQ NDGLIRPKVG LSGILMVKGS PYVNMNQVNQ NEYLYGTLLS
501: ENIIGVIHDH YVTFHLNMDI DGPSNNSFVK VNLQKEMTSP GESPRRSYLK AVRNVAKTEK DAQIKLKLYD PSEFHVINSN KKSRVGNPVG YKVVPGGTAA
601: SLLDHDDPPQ KRAAFTNNQI WVTPYNESEQ WAAGLFVYQS QGDDTLAVWS DRDRAIENKD IVVWYTLGFH HIPCQEDFPI MPTVSSSFEI KPVNFFESNP
701: ILNIPPNSPK DLPICKAAAS A

Best Arabidopsis Sequence Match ( AT4G12290.1 )
(BLAST)

001: MDQKSFFRLI FLIVTAGFII SFTSTNFPHA PTRLLDCTDS SSSPLCASRN FLFNKQQPRP IPKHDPKPNT KNHDHVSDTP NHPLDPLTVS EINKIRSILS
101: SHALFTSGTP HALHTVVLEE PEKNLVRHWE KGNPLPPRKA SVIARVGADT HVLTVDISTG RVDSENSPVR VSGYPMMTIE EMNDITVVPF SNADFNRTII
201: SRGVNLTDVI CFPISCGWFG NKEENARVIK SQCFMTQGTP NFYMRPIEGL TILIDLDTKQ VIEITDTGRA IPIPGSTNTD YRFQKLATTD KTRPLNPISI
301: EQPRGPSFVI EDNHLVKWAN WEFHLKPDPR AGVVISRVRV HDPDTHETRD VMYKGFVSEL FVPYMDPSDA WYFKTYMDAG EYGFGLQAMP LVPLNDCPRN
401: AAYMDGVFAA ADGTPFVREN MVCIFESYAG DIGWRHSESP ITGIPIREVR PKVTLVVRMA ASVGNYDYII DYEFQTDGLI KAKVGLSGIL MVKGTTYQNK
501: NQVEKDKDGN EEELHGTLLS ENVIGVIHDH YVTFYLDLDV DGPDNSFVKV NLKRQETEPG ESPRKSYLKA VRNIAKTEKD GQIKLSLYDP SEFHVINSGK
601: TTRVGNPTGY KVVPRTTAAS LLDHDDPPQK RGAFTNNQIW VTPYNKSEQW AGGLFTYQSH GDDTLAVWSD RDRDIENKDI VVWYTLGFHH IPCQEDFPIM
701: PTVSSSFDLK PVNFFERNPI LSAAPNFEHD LPVCGVQSVS A

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L742]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.