Factsheet for PGSC0003DMT400079675

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006980.2.1	Tomato	extracellular	92.12	91.36
Solyc08g062280.1.1	Tomato	cytosol	25.73	68.13
KRH35416	Soybean	nucleus	68.05	67.35
KRG91403	Soybean	nucleus	67.84	67.15
GSMUA_AchrUn_...	Banana	cytosol	53.73	62.56
Zm00001d006161_P001	Maize	extracellular	56.64	56.29
Zm00001d021197_P001	Maize	extracellular	56.02	55.67
TraesCS5A01G308800.1	Wheat	extracellular, plasma membrane, plastid	55.39	55.39
HORVU5Hr1G080110.4	Barley	extracellular	54.77	54.77
TraesCS5B01G309300.1	Wheat	extracellular, plasma membrane, plastid	55.19	54.62
TraesCS5B01G309700.1	Wheat	extracellular	54.15	54.49
TraesCS5D01G316000.1	Wheat	extracellular	54.77	54.43
Os09t0520800-01	Rice	extracellular, vacuole	55.6	54.25
TraesCS5A01G309000.1	Wheat	extracellular, golgi	54.56	54.12
HORVU5Hr1G086390.1	Barley	extracellular, plasma membrane	54.98	53.43
EER99200	Sorghum	mitochondrion, plastid	57.05	48.08
PGSC0003DMT400050536	Potato	cytosol	44.4	45.73
VIT_16s0022g02170.t01	Wine grape	extracellular, golgi, vacuole	69.5	34.82

Protein Annotations

KEGG:00511+3.2.1.51	EntrezGene:102600482	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674
GO:GO:0003824	GO:GO:0004560	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M1D297	PFAM:PF01120
EnsemblPlantsGene:PGSC0003DMG400031031	PGSC:PGSC0003DMG400031031	EnsemblPlants:PGSC0003DMT400079675	PANTHER:PTHR10030	PANTHER:PTHR10030:SF37	SMART:SM00812
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0002953936	RefSeq:XP_006348043.1	SEG:seg

Description

Alpha-l-fucosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400031031]

Coordinates

chr3:-:41112339..41117801

Molecular Weight (calculated)

54425.5 Da

IEP (calculated)

7.650

GRAVY (calculated)

-0.413

Length

482 amino acids

Sequence
(BLAST)

001: MTKPYYTSLL CLFITLLQLI IPSQEAQITP PPLPILPLPN YAQLKWQQRE LIMFLHFGVN TFTDSEWGTG DENPSIFNPT NLDANQWVDT AVQAGVSLVI
101: LTAKHHDGFC LWPSKYTDHS VIRSRWKNGQ GDVVREFVNA AKARGVDVGL YLSPWDRHDK SYGLNKEYNE HYLAQLQELL NKYGDVKEIW FDGAKGSNVP
201: NMTYYFDDWF AMVNELQSAI NIFSDAGPGV RWVGNEHGFA GNTSWSTINR TLLSIGGSNA DYLNSGDPKG TDWLPPECDV SIRPGWFWHK SQEPKSLSEL
301: LKIYYNSIGR NCVLLLNVPP NTQGLITNSD VQRLKEFRSA IDTIFSTNLA KECSIKASSQ RGGKNGGFGP ENMLDDDHLW TYWGPKDDKE DNWIEFKTKS
401: NKSLRFNVVR IQEAIGLGQR VKSHEIYVDG KRIANGTTIG YKKLHRIEKG VVSNAKSVKI KIIGSKGTPL ISSIGLHFDP FW

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.