CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35416	Soybean	nucleus	95.48	95.48
PGSC0003DMT400079675	Potato	extracellular, vacuole	67.15	67.84
Solyc03g006980.2.1	Tomato	extracellular	66.12	66.26
GSMUA_AchrUn_...	Banana	cytosol	52.36	61.59
HORVU5Hr1G080110.4	Barley	extracellular	55.24	55.81
TraesCS5B01G309700.1	Wheat	extracellular	54.62	55.53
TraesCS5A01G309000.1	Wheat	extracellular, golgi	55.24	55.35
Os09t0520800-01	Rice	extracellular, vacuole	56.06	55.26
TraesCS5D01G316000.1	Wheat	extracellular	55.03	55.26
Zm00001d021197_P001	Maize	extracellular	55.03	55.26
Zm00001d006161_P001	Maize	extracellular	54.41	54.64
Solyc08g062280.1.1	Tomato	cytosol	20.33	54.4
TraesCS5A01G308800.1	Wheat	extracellular, plasma membrane, plastid	53.59	54.15
TraesCS5B01G309300.1	Wheat	extracellular, plasma membrane, plastid	53.8	53.8
HORVU5Hr1G086390.1	Barley	extracellular, plasma membrane	53.39	52.42
EER99200	Sorghum	mitochondrion, plastid	55.65	47.38
KRH22840	Soybean	plastid	46.61	42.43
KRH26522	Soybean	cytosol	20.12	35.25
VIT_16s0022g02170.t01	Wine grape	extracellular, golgi, vacuole	68.99	34.93

Protein Annotations

KEGG:00511+3.2.1.51	EntrezGene:100775293	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	EMBL:ACUP02012682
InterPro:FUC_metazoa-typ	EnsemblPlantsGene:GLYMA_20G152400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0006004
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF
UniProt:I1NGM2	InterPro:IPR008979	EnsemblPlants:KRG91403	ProteinID:KRG91403	ProteinID:KRG91403.1	PFAM:PF01120
PRINTS:PR00741	PANTHER:PTHR10030	PANTHER:PTHR10030:SF37	SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445
SignalP:SignalP-noTM	UniParc:UPI000233DE13	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:39116996..39119503

Molecular Weight (calculated)

55681.3 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.325

Length

487 amino acids

Sequence
(BLAST)

001: MVRLWCSSLL MTILFQQLIR LCISWSVQTP TPPLPILPLP TYSQLQWQQR EIIMFLHFGV NTFTDREWGT GQENPAIFNP TGLNTTQWAT VAADAGVSLM
101: ILTAKHHDGF CLWPSKYTDH SVISSPWQGG KGDVVQDFVN AATAQGIDVG IYLSPWDRHD PRYGNDLLYN QYYLAQLQEL LKKYSNVREI WFDGAKGANA
201: KNMTYYFSDW FSMVKELQSS INIFSDAGPD VRWVGDETGS AGYTCWSTIN RTSLSIGSPD IIQYINTGDP KGTDWLPAEC DVSIRHGWFW HKSESPKKLS
301: ELLDIYYNSV GRNCVLLLNV PPNTSGLITE ADANRLKEFR SAINTIFHQN LAEDCFVKVS SQRRGFGPEK MLDSEHLWSY WAPRDDDGEK DHWIEIWAKE
401: GKFRFNVIRI QEAIGLGQRI KRHEIYVDGK LIIKATTVGY KRLHRLNGGE VHARVVRIRI RKARGVPLIS SIGLHYDPFW HSKFTPT

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.