CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 2
mitochondrion 3
extracellular 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	KRH42483	AT2G01950.1	19000166
AT2G28100.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26522	Soybean	cytosol	44.49	85.61
PGSC0003DMT400050536	Potato	cytosol	57.01	65.17
CDX77155	Canola	plastid	57.38	63.43
Solyc11g069010.1.1	Tomato	extracellular, golgi	61.12	63.13
Bra034388.1-P	Field mustard	plastid	57.57	62.1
AT2G28100.1	Thale cress	extracellular, golgi	58.69	62.06
VIT_06s0061g00480.t01	Wine grape	plastid	62.99	61.83
CDY30508	Canola	plastid	57.2	61.69
TraesCS2A01G407300.1	Wheat	cytosol	51.59	59.35
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	56.45	58.64
TraesCS2D01G404300.1	Wheat	extracellular	56.07	58.25
TraesCS2B01G425000.1	Wheat	extracellular	55.7	57.86
EES12650	Sorghum	extracellular	55.33	57.7
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	54.39	56.4
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	7.1	52.05
KRG91403	Soybean	nucleus	42.43	46.61
KRH35416	Soybean	nucleus	42.06	46.2
Zm00001d002682_P001	Maize	extracellular	55.33	45.54
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	10.28	44.35

Protein Annotations

KEGG:00511+3.2.1.51	EntrezGene:100807583	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	EMBL:ACUP02008437
EnsemblPlantsGene:GLYMA_13G322800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:K7M352
EnsemblPlants:KRH22840	ProteinID:KRH22840	ProteinID:KRH22840.1	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27
SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000233AC28	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:41714974..41718293

Molecular Weight (calculated)

60391.7 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.180

Length

535 amino acids

Sequence
(BLAST)

001: MKLNSKSLRL SCKSHNPGIK ISTCTLPNFL IRILLLCLCC FLVPASCSRK PPPLPILPLP TTFQLQWQLD GMALFFHFGT NTFTDSEWGT GHANPTVFNP
101: TKLNASQWIR VAKDSGFSRV ILTVKHHDGF CLWPSDYTNY TVRSSNWRNG NGDVVAELAA AAKDAGVGLG FYLSPWDRHE ACYGDTLQYN EFYLAQMTEL
201: LTRYGEVKDI FLDAAKEDET DMHYLFDSWF SLIHQLQPGA IVFSDLGPDT RWAGNEYGAA GSTCWSLYNK TGYEIGYIDN QYNSEGDQFG PDWLPATCDV
301: SIRTGWFWHA SEQPKSARSL LEIYYKSVGR NCQLLLNVPP NSSGLISDED IQVLQEFAEL KRSIFSHNLA INAVINASSI RGGIQETHFS PYNVLEEGIY
401: TYWAPWENQS KWILYIDLQE LVSFNVLQLQ EPINMGQRVI EFHLEALSPD GVWMRVVNGT TIGYQRLLLF PKLKAQYLKL VMDKSRADPL ISYFGIYMDP
501: VTILSDISDK KSGACFNGSQ VLQTTTNNSY PSATM

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.