Factsheet for Os04t0560400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12650	Sorghum	extracellular	82.56	83.04
TraesCS2A01G407300.1	Wheat	cytosol	74.81	83.01
TraesCS2B01G425000.1	Wheat	extracellular	80.62	80.78
TraesCS2D01G404300.1	Wheat	extracellular	80.43	80.58
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	9.5	67.12
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	65.12	65.24
Zm00001d002682_P001	Maize	extracellular	81.4	64.62
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	15.12	62.9
CDX77155	Canola	plastid	56.2	59.92
CDY30508	Canola	plastid	56.59	58.87
Bra034388.1-P	Field mustard	plastid	56.4	58.67
PGSC0003DMT400050536	Potato	cytosol	52.52	57.91
AT2G28100.1	Thale cress	extracellular, golgi	55.23	56.32
VIT_06s0061g00480.t01	Wine grape	plastid	58.53	55.41
Solyc11g069010.1.1	Tomato	extracellular, golgi	55.62	55.41
KRH22840	Soybean	plastid	56.4	54.39
KRH26522	Soybean	cytosol	27.52	51.08
Os09t0520800-01	Rice	extracellular, vacuole	46.71	48.79

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	UniProt:A0A0P0WDD2	ProteinID:BAS90469.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0048046	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF
InterPro:IPR008979	EnsemblPlantsGene:Os04g0560400	EnsemblPlants:Os04t0560400-01	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27
SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0003939449	SEG:seg

Description

Similar to Alpha-L-fucosidase 1. (Os04t0560400-01)

Coordinates

chr4:-:28071456..28074593

Molecular Weight (calculated)

56664.1 Da

IEP (calculated)

4.565

GRAVY (calculated)

-0.013

Length

516 amino acids

Sequence
(BLAST)

001: ATILLLLLGL LVGLPLLRAH GVTGSAAPTP PPLPVLPVPS YAQLQWQLSE MALFLHFGPN TFTDSEWGSV RADPAVFAPS ALDAGQWARA AAAGGFGRVV
101: LTAKHHDGFC LWPSALTNYS VAASPWKGGA GDVVGELAAA ARAEGIGLGL YLSPWDRHEP VYGDTVAYNE HYLGQMTELL TRYGDVEEVW LDGAKGEGKD
201: MDYMFDAWFA LIHQLQQRVV IFSDAGPDTR WVGDEAGVAG YTCWSPFNKS TVTIGHIIPE YSRCGDPFGQ DWVPAECDVS IRPGWFWHAS EKPKNATTLL
301: DIYYKSVGRN CLLILNVPPN SSGLISTEDM QVLQEFTEIR QTIFSQNFAA NATVTASTVR GGLGNQQFAP SNVLQESIYS YWAPEEGQSS WEMLFDLGQS
401: ASFNVIQLQE PIQMGQRVIK FRVEILVDEL WQTIVEGTTI GYKRLFQFPV VEGQFLKLSI DGARADPLIS FFGVFTDSFS VTYSLENHEK PSVVNSSEVI
501: MLRTDHSFGN KSIATM

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.