Factsheet for TraesCS2D01G404300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28100.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28100.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G407300.1	Wheat	cytosol	88.54	98.06
TraesCS2B01G425000.1	Wheat	extracellular	98.06	98.06
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	13.2	93.15
EES12650	Sorghum	extracellular	80.39	80.7
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	80.58	80.43
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	64.08	64.08
Zm00001d002682_P001	Maize	extracellular	80.39	63.69
CDX77155	Canola	plastid	54.95	58.47
PGSC0003DMT400050536	Potato	cytosol	52.62	57.91
CDY30508	Canola	plastid	54.76	56.85
Bra034388.1-P	Field mustard	plastid	54.37	56.45
KRH22840	Soybean	plastid	58.25	56.07
AT2G28100.1	Thale cress	extracellular, golgi	54.95	55.93
VIT_06s0061g00480.t01	Wine grape	plastid	58.25	55.05
Solyc11g069010.1.1	Tomato	extracellular, golgi	55.34	55.02
KRH26522	Soybean	cytosol	29.13	53.96
TraesCS5D01G316000.1	Wheat	extracellular	46.41	49.28

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SMART:SM00812
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G404300	EnsemblPlants:TraesCS2D01G404300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:518801626..518806529

Molecular Weight (calculated)

56728.0 Da

IEP (calculated)

4.842

GRAVY (calculated)

-0.072

Length

515 amino acids

Sequence
(BLAST)

001: MSTTIALLLV HLHLLLCGHG AAAVAATATP PPLPVLPVPS YAQLQWQLSE MALFIHFGPN TFTDSEWGSG HADPAVFAPS ALDAGQWARV AAEGGFGRVV
101: LTAKHHDGFC LWPSALTDYS VAASPWRGGA GDVVGELSAA ARAEGIGLGL YLSPWDRHEP VYGDTVAYNE HYMGQMTELL TRYGDVEEVW LDGAKGDDTY
201: MDYMFDAWFA LIHQLQRRVV IFSDAGPDTR WVGDEAGIAG RTCWSPFNKT VVTIGHIIPE YSQSGDQFGE EWVPAECDVS IRPGWFWHAS EKPKSAVTLL
301: DIYYKSVGRN CLLILNVPPN SSGLISDEDM QVLQEFTEIR RTIFSHNFAA NATGTASSVR GGLENLQFAP SNTLRDSIYS YWAPQEGQTS WEMLFDLGRS
401: TSFNLLQLQE PIQMGQRVIE FHVDVLLGGL WQTILEGTTI GYKRLLRFPA VDARYLKLYV DSARADPLIA FVGVFMDPFS DAYGLDHEKP SHTNSSEVIM
501: LRRGHAAGNR STATM

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.