Factsheet for TraesCS2A01G407300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28100.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28100.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G404300.1	Wheat	extracellular	98.06	88.54
TraesCS2B01G425000.1	Wheat	extracellular	96.99	87.57
EES12650	Sorghum	extracellular	82.58	74.85
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	83.01	74.81
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	66.67	60.19
Zm00001d002682_P001	Maize	extracellular	82.37	58.92
PGSC0003DMT400050536	Potato	cytosol	58.06	57.69
CDX77155	Canola	plastid	57.2	54.96
KRH26522	Soybean	cytosol	32.04	53.6
CDY30508	Canola	plastid	56.77	53.23
AT2G28100.1	Thale cress	extracellular, golgi	57.85	53.16
Bra034388.1-P	Field mustard	plastid	56.34	52.82
Solyc11g069010.1.1	Tomato	extracellular, golgi	58.28	52.32
VIT_06s0061g00480.t01	Wine grape	plastid	60.65	51.74
KRH22840	Soybean	plastid	59.35	51.59
TraesCS5A01G309000.1	Wheat	extracellular, golgi	46.02	44.03
TraesCS5A01G308800.1	Wheat	extracellular, plasma membrane, plastid	44.95	43.36
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	4.73	30.14

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SMART:SM00812
SUPFAM:SSF49785	SUPFAM:SSF51445	EnsemblPlantsGene:TraesCS2A01G407300	EnsemblPlants:TraesCS2A01G407300.1	:	:

Description

No Description!

Coordinates

chr2A:+:662962063..662965747

Molecular Weight (calculated)

51511.7 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.116

Length

465 amino acids

Sequence
(BLAST)

001: MALFIHFGPN TFTDSEWGSG HADPAVFAPS ALDAGQWARV AAEGGFGRVV LTAKHHDGFC LWPSALTDYS VAASPWRGGA GDVVGELSAA ARAEGIGLGL
101: YLSPWDRHEP VYGDTVAYNE HYMGQMTELL TRYGDVEEVW LDGAKGDDMY MDYMFDAWFA LIHQLQRRVV IFSDAGPDTR WVGDEAGIAG RTCWSPFNKT
201: VVTIGHIIPE YSQSGDQFGE EWVPAECDVS IRPGWFWHAS EKPKSAVTLL DIYYKLVGRN CLLILNVPPN SSGLISDEDM QVLQEFTEIR QTIFSHNFAA
301: NATVTASSVR GGLENLQFAP SNALRDSIYS YWAPQEGQTS WEMLFDLGRS TSFNLLQLQE PIQMGQRVIE FHVDVLLGGL WQTILEGTTI GYKRLLRFPA
401: VEARYLKLCV DSARADPLIA FVGVFMDPFS DAYGLDHEKP SHTNSSEVIM LRRGHAAANR STAAM

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.