Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
OQU92006 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G28100.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G407300.1 | Wheat | cytosol | 74.85 | 82.58 |
Os04t0560400-01 | Rice | extracellular, mitochondrion, plasma membrane | 83.04 | 82.56 |
TraesCS2B01G425000.1 | Wheat | extracellular | 81.09 | 80.78 |
TraesCS2D01G404300.1 | Wheat | extracellular | 80.7 | 80.39 |
Zm00001d002682_P001 | Maize | extracellular | 93.76 | 74.0 |
HORVU2Hr1G096280.1 | Barley | endoplasmic reticulum | 10.14 | 71.23 |
HORVU1Hr1G057300.1 | Barley | cytosol, extracellular | 16.57 | 68.55 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 64.13 | 63.88 |
CDX77155 | Canola | plastid | 56.73 | 60.12 |
PGSC0003DMT400050536 | Potato | cytosol | 54.0 | 59.19 |
CDY30508 | Canola | plastid | 57.12 | 59.07 |
Bra034388.1-P | Field mustard | plastid | 56.73 | 58.67 |
Solyc11g069010.1.1 | Tomato | extracellular, golgi | 57.7 | 57.14 |
AT2G28100.1 | Thale cress | extracellular, golgi | 56.34 | 57.11 |
VIT_06s0061g00480.t01 | Wine grape | plastid | 59.45 | 55.96 |
KRH22840 | Soybean | plastid | 57.7 | 55.33 |
KRH26522 | Soybean | cytosol | 28.27 | 52.16 |
EER99200 | Sorghum | mitochondrion, plastid | 45.81 | 41.08 |
Protein Annotations
KEGG:00511+3.2.1.51 | Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:50.3.2 | EntrezGene:8057566 | UniProt:C5YDX7 |
EnsemblPlants:EES12650 | ProteinID:EES12650 | ProteinID:EES12650.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004560 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005975 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf | InterPro:Glyco_hydro_29 | InterPro:Glycoside_hydrolase_SF |
InterPro:IPR008979 | PFAM:PF01120 | PANTHER:PTHR10030 | PANTHER:PTHR10030:SF27 | SMART:SM00812 | EnsemblPlantsGene:SORBI_3006G177300 |
SUPFAM:SSF49785 | SUPFAM:SSF51445 | unigene:Sbi.21658 | SignalP:SignalP-noTM | UniParc:UPI0001A87659 | RefSeq:XP_002448322.1 |
SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:53224680..53227854
Molecular Weight (calculated)
56474.1 Da
IEP (calculated)
5.531
GRAVY (calculated)
-0.030
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALLPLLLA HLLLCAHGAT ASSAATPPPL PVLPVPSYAQ LRWQLSEMAL FLHFGPNTFT DSEWGTGRAD PSVFAPSALD AGQWARVAAQ GGFGRVVLTA
101: KHHDGFCLWP SALTDYSVAA SPWRGGAGDV VADLAAAARA EGIGLGLYLS PWDRHEPVYG DTIAYNEHYL GQMTELLTRY GDLEEIWLDG AKGDAKKMNY
201: MFDAWFSLIH QLQQRVVIFS DAGPDTRWVG DEAGVAGYTC WSPFNKSSVT IGHTIAEYSR SGDPFGQDWV PAECDVSIRP GWFWHASEKP KNATTLLDIY
301: YKSVGRNCLL ILNVPPNSSG LIANEDILVL QEFTGIRHAI FSQNFAANAT VTANSVRGGQ DNLQFAPSKV LEDGIYSYWA PQEGQTCWEM LFDLGRSTSF
401: NMLQLQEPIQ LGQRVIEFHV AILIDELWQT IVEGTTIGYK RLLLFPVVES RYLKLSIDSA RADPLISFFG VFMDPFSSRH SLQNHVKPPR TNSSDVTMLR
501: MAHASVNKSI AAM
101: KHHDGFCLWP SALTDYSVAA SPWRGGAGDV VADLAAAARA EGIGLGLYLS PWDRHEPVYG DTIAYNEHYL GQMTELLTRY GDLEEIWLDG AKGDAKKMNY
201: MFDAWFSLIH QLQQRVVIFS DAGPDTRWVG DEAGVAGYTC WSPFNKSSVT IGHTIAEYSR SGDPFGQDWV PAECDVSIRP GWFWHASEKP KNATTLLDIY
301: YKSVGRNCLL ILNVPPNSSG LIANEDILVL QEFTGIRHAI FSQNFAANAT VTANSVRGGQ DNLQFAPSKV LEDGIYSYWA PQEGQTCWEM LFDLGRSTSF
401: NMLQLQEPIQ LGQRVIEFHV AILIDELWQT IVEGTTIGYK RLLLFPVVES RYLKLSIDSA RADPLISFFG VFMDPFSSRH SLQNHVKPPR TNSSDVTMLR
501: MAHASVNKSI AAM
001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL
Arabidopsis Description
FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.