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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • plastid 1
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G28100.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G407300.1 Wheat cytosol 74.85 82.58
Os04t0560400-01 Rice extracellular, mitochondrion, plasma membrane 83.04 82.56
TraesCS2B01G425000.1 Wheat extracellular 81.09 80.78
TraesCS2D01G404300.1 Wheat extracellular 80.7 80.39
Zm00001d002682_P001 Maize extracellular 93.76 74.0
HORVU2Hr1G096280.1 Barley endoplasmic reticulum 10.14 71.23
HORVU1Hr1G057300.1 Barley cytosol, extracellular 16.57 68.55
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi 64.13 63.88
CDX77155 Canola plastid 56.73 60.12
PGSC0003DMT400050536 Potato cytosol 54.0 59.19
CDY30508 Canola plastid 57.12 59.07
Bra034388.1-P Field mustard plastid 56.73 58.67
Solyc11g069010.1.1 Tomato extracellular, golgi 57.7 57.14
AT2G28100.1 Thale cress extracellular, golgi 56.34 57.11
VIT_06s0061g00480.t01 Wine grape plastid 59.45 55.96
KRH22840 Soybean plastid 57.7 55.33
KRH26522 Soybean cytosol 28.27 52.16
EER99200 Sorghum mitochondrion, plastid 45.81 41.08
Protein Annotations
KEGG:00511+3.2.1.51Gene3D:2.60.120.260Gene3D:3.20.20.80MapMan:50.3.2EntrezGene:8057566UniProt:C5YDX7
EnsemblPlants:EES12650ProteinID:EES12650ProteinID:EES12650.1GO:GO:0003674GO:GO:0003824GO:GO:0004560
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:Galactose-bd-like_sfInterPro:Glyco_hydro_29InterPro:Glycoside_hydrolase_SF
InterPro:IPR008979PFAM:PF01120PANTHER:PTHR10030PANTHER:PTHR10030:SF27SMART:SM00812EnsemblPlantsGene:SORBI_3006G177300
SUPFAM:SSF49785SUPFAM:SSF51445unigene:Sbi.21658SignalP:SignalP-noTMUniParc:UPI0001A87659RefSeq:XP_002448322.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:-:53224680..53227854
Molecular Weight (calculated)
56474.1 Da
IEP (calculated)
5.531
GRAVY (calculated)
-0.030
Length
513 amino acids
Sequence
(BLAST)
001: MAALLPLLLA HLLLCAHGAT ASSAATPPPL PVLPVPSYAQ LRWQLSEMAL FLHFGPNTFT DSEWGTGRAD PSVFAPSALD AGQWARVAAQ GGFGRVVLTA
101: KHHDGFCLWP SALTDYSVAA SPWRGGAGDV VADLAAAARA EGIGLGLYLS PWDRHEPVYG DTIAYNEHYL GQMTELLTRY GDLEEIWLDG AKGDAKKMNY
201: MFDAWFSLIH QLQQRVVIFS DAGPDTRWVG DEAGVAGYTC WSPFNKSSVT IGHTIAEYSR SGDPFGQDWV PAECDVSIRP GWFWHASEKP KNATTLLDIY
301: YKSVGRNCLL ILNVPPNSSG LIANEDILVL QEFTGIRHAI FSQNFAANAT VTANSVRGGQ DNLQFAPSKV LEDGIYSYWA PQEGQTCWEM LFDLGRSTSF
401: NMLQLQEPIQ LGQRVIEFHV AILIDELWQT IVEGTTIGYK RLLLFPVVES RYLKLSIDSA RADPLISFFG VFMDPFSSRH SLQNHVKPPR TNSSDVTMLR
501: MAHASVNKSI AAM
Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)
001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL
Arabidopsis Description
FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.