CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	CDY03088	AT2G01950.1	19000166
AT2G28100.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034388.1-P	Field mustard	plastid	97.98	97.98
CDX77155	Canola	plastid	92.94	95.25
AT2G28100.1	Thale cress	extracellular, golgi	83.06	81.42
PGSC0003DMT400050536	Potato	cytosol	59.68	63.25
VIT_06s0061g00480.t01	Wine grape	plastid	66.94	60.92
Solyc11g069010.1.1	Tomato	extracellular, golgi	62.9	60.23
KRH22840	Soybean	plastid	61.69	57.2
EES12650	Sorghum	extracellular	59.07	57.12
TraesCS2A01G407300.1	Wheat	cytosol	53.23	56.77
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	58.87	56.7
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	58.87	56.59
TraesCS2D01G404300.1	Wheat	extracellular	56.85	54.76
TraesCS2B01G425000.1	Wheat	extracellular	56.85	54.76
KRH26522	Soybean	cytosol	29.03	51.8
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	6.85	46.58
Zm00001d002682_P001	Maize	extracellular	59.07	45.08
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	9.07	36.29

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:A0A078H131	UniProt:A0A078H131
EnsemblPlants:CDY30508	ProteinID:CDY30508	ProteinID:CDY30508.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004560
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00045224001	InterPro:Galactose-bd-like_sf
InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27
SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EE4F20	SEG:seg

Description

BnaA04g16250DBnaA04g16250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H131]

Coordinates

chrLK032254:-:145740..147326

Molecular Weight (calculated)

55942.2 Da

IEP (calculated)

5.364

GRAVY (calculated)

-0.299

Length

496 amino acids

Sequence
(BLAST)

001: MSLLTLLFFS SLLSLSKSTP LKPHPLPILP LPSSQQLQWQ LGSMSMFLHF GPNTFTDSEW GTGKADPSVF NPAHLNATQW VQIAKDSGFS RVILTAKHHD
101: GFCLWPSVYT DYSVKSSPWR NGTGDVVAEL ASAAAEAGIG LGLYLSPWDR HDGAYGKTLE YNEFYLSQMT ELLTKYGEIK EVWLDGAKGE GEKDMEYYFT
201: TWFSLIHQLQ PGAVIFSDAG PDVRWIGDEA GVAGSTCWSL FNRTNAKIGD TDPLYSQQGD GFGQDWVPAE CDVSIRPGWF WHVLESPKPV AKLLDIYYNS
301: VGRNCLFLLN VPPNSSGLIS EQDIKVLKEF RELKNSIFAN NFARKAFINS TSVRGSQFSA ENVLEEGLDK YWAPEEKQKE WELYLEFRDP VSFNVLEVQE
401: PIQMGQRVAS YHLEMRNVES GKWERVVRGT TVGFKRLLRF PRCESRSLKL VVDKARADPL ISYIGIYLDK FSDSGRNSSK ITITRTLQEE LVLNDS

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.