CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	KRH42483	AT2G01950.1	19000166
AT2G28100.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22840	Soybean	plastid	85.61	44.49
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	18.35	41.13
PGSC0003DMT400050536	Potato	cytosol	56.83	33.76
TraesCS2A01G407300.1	Wheat	cytosol	53.6	32.04
Solyc11g069010.1.1	Tomato	extracellular, golgi	57.91	31.08
VIT_06s0061g00480.t01	Wine grape	plastid	58.99	30.09
CDX77155	Canola	plastid	51.8	29.75
Bra034388.1-P	Field mustard	plastid	52.16	29.23
TraesCS2D01G404300.1	Wheat	extracellular	53.96	29.13
AT2G28100.1	Thale cress	extracellular, golgi	52.88	29.05
CDY30508	Canola	plastid	51.8	29.03
TraesCS2B01G425000.1	Wheat	extracellular	53.6	28.93
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	52.88	28.54
EES12650	Sorghum	extracellular	52.16	28.27
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	51.08	27.52
Zm00001d002682_P001	Maize	extracellular	52.88	22.62
KRG91403	Soybean	nucleus	35.25	20.12
KRH35416	Soybean	nucleus	34.89	19.92
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	0.0	0.0

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	UniProt:A0A0R0H775	EMBL:ACUP02007717
EnsemblPlantsGene:GLYMA_12G177800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979
EnsemblPlants:KRH26522	ProteinID:KRH26522	ProteinID:KRH26522.1	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SUPFAM:SSF49785
SUPFAM:SSF51445	UniParc:UPI0006EDEB29	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:33696198..33697502

Molecular Weight (calculated)

31712.6 Da

IEP (calculated)

4.543

GRAVY (calculated)

-0.223

Length

278 amino acids

Sequence
(BLAST)

001: MNYLFDSWIS LIHQLQPGAT NFSDLGPDTR WIGNEYGAAG STCWSLYNKT GCEIGYIDSQ YNSEGDQFCP DWIPATCDVS IRPSWFWHAS EQPKSLLLNV
101: TPNSSGLISD EDIQILQEFT ELRSIRGGIQ ETHFSPYNVL EEGIYTYWAP GENQTKWILY IDLQELVSFN ILQLQEPINM GQRVIEFHLE ALSLDGVWMR
201: VVYGTTIGYQ RLLRFPKLKS QYLKLVVDKL RRPVDIFGIY MDPVTVLSDL SDRKSGACFN GGQVLQTTRN SSYLSATM

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.