Factsheet for Solyc11g069010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050536	Potato	cytosol	85.52	94.66
AT2G28100.1	Thale cress	extracellular, golgi	62.74	64.23
CDX77155	Canola	plastid	59.85	64.05
CDY30508	Canola	plastid	60.23	62.9
Bra034388.1-P	Field mustard	plastid	60.04	62.7
VIT_06s0061g00480.t01	Wine grape	plastid	65.64	62.39
KRH22840	Soybean	plastid	63.13	61.12
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	59.07	59.42
TraesCS2A01G407300.1	Wheat	cytosol	52.32	58.28
KRH26522	Soybean	cytosol	31.08	57.91
EES12650	Sorghum	extracellular	57.14	57.7
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	55.41	55.62
TraesCS2B01G425000.1	Wheat	extracellular	55.02	55.34
TraesCS2D01G404300.1	Wheat	extracellular	55.02	55.34
Solyc03g006980.2.1	Tomato	extracellular	44.98	47.94
Zm00001d002682_P001	Maize	extracellular	56.76	45.23
Solyc08g062280.1.1	Tomato	cytosol	15.44	43.96
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	5.79	41.1
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	8.49	35.48

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:K4DA58	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27
SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g069010.1	EnsemblPlants:Solyc11g069010.1.1
UniParc:UPI000276A7A2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:53575699..53579690

Molecular Weight (calculated)

58789.8 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.288

Length

518 amino acids

Sequence
(BLAST)

001: MIKKKPITQF LKTIIILLLF QLSTSSHRKP PPLPILPIPK SRQISWQIAE MALFLHFGTN TFTDSEWGTG HVDPSIFNPK LLNATQWVTV AKDFGFKRVV
101: LTAKHHDGFC LWPSKYTDYS VKSSPWRNGV GDIVADLAEA ARNGGLELGL YLSPWDRHEH CYGETLEYNE YYMGQMTELL TRYGEIKYVF LDGAKGDGEK
201: DMEYFFDDWF SLIHQLQPGA SIFSDVGPDT RWVGNENGVA GSTCWSLFNG SNVKIGGYSD ARYSAEGDAF GQDWVPAECD VSIRSGWFWH ASEKPKSAMT
301: LLDLYYKSVG RNCPLLLNVP PNSSGLISDE DIHVLKEFSE LRNSIFSHNL AKSALLSASS IRGDSNDTQF SPKNVIEEGL HTYWAPDQGQ QSDWTLYLQF
401: QQVITFNVLG LQEPIQMGQR IIEFHLDMLD ENGKWQHVVN GTTVGYRRLL LFPTVKSHLL RLVIDKSKVL PLISHLGIYM DSYTVPRHVS DDTHMKSKFI
501: NNLFFRRTAY NQSQSASI

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.