Factsheet for GSMUA_Achr11P22060_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G407300.1	Wheat	cytosol	60.19	66.67
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	65.24	65.12
TraesCS2B01G425000.1	Wheat	extracellular	64.85	64.85
EES12650	Sorghum	extracellular	63.88	64.13
TraesCS2D01G404300.1	Wheat	extracellular	64.08	64.08
PGSC0003DMT400050536	Potato	cytosol	56.12	61.75
CDX77155	Canola	plastid	57.48	61.16
VIT_06s0061g00480.t01	Wine grape	plastid	64.08	60.55
Bra034388.1-P	Field mustard	plastid	57.09	59.27
Solyc11g069010.1.1	Tomato	extracellular, golgi	59.42	59.07
CDY30508	Canola	plastid	56.7	58.87
AT2G28100.1	Thale cress	extracellular, golgi	57.67	58.7
KRH22840	Soybean	plastid	58.64	56.45
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	7.96	56.16
GSMUA_AchrUn_...	Banana	cytosol	43.11	53.62
KRH26522	Soybean	cytosol	28.54	52.88
Zm00001d002682_P001	Maize	extracellular	63.5	50.31
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	10.1	41.94

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr11G22060_001	EnsemblPlants:GSMUA_Achr11P22060_001
EnsemblPlants:GSMUA_Achr11T22060_001	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M0RUD6
PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445
SignalP:SignalP-noTM	UniParc:UPI0002965EAE	SEG:seg	:	:	:

Description

Putative alpha-L-fucosidase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G22060_001]

Coordinates

chr11:+:22460577..22465164

Molecular Weight (calculated)

57566.9 Da

IEP (calculated)

5.554

GRAVY (calculated)

-0.202

Length

515 amino acids

Sequence
(BLAST)

001: MTPIQSRNPS FLISLLCLID VCVSLGSSHP TPPPLPIAPL PSAAQLRWQL GEMALFLHFG PNTFTDSEWG SGHAPPSVFR PGSLDARQWA RTAAAGGFAR
101: VVLTAKHHDG FCLWPSAYTD YSVRSSPWRA GRGDVVAELA AAAREYGIGM GVYLSPWDRH DPSYGSTVKY NEYYLGQMTE LLTNYGDIQE VWLDGAKGDD
201: KEMEYHFDCW FQLIHQLQPG VMIFSDAGPD TRWIGDESGV AGSTCWSLFN RSSVTIGHID EQSSRHGDPH GIDWVPAECD VSIRPGWFWH SSEHPKSAME
301: LLDIYYESVG RNCLLILNVP PNSSGLISDE DLQVLQDFTA LRITIFSHNL AWNATVTASS VRGGDNETRF SPSNVLQKGI SSYWAPDESE SDWAIFLDLE
401: QLISFNVLQI QEPIQMGQRI IEFQVDILAS GEWKTIANGT TIGYKRLLRF PMVETQFLRF IINKSRASPL ISYIGIHADP FSMVYDSVTA RSSSTKRFSF
501: KRRNKRFGYA LESAI

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.