Factsheet for VIT_06s0061g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 3
mitochondrion 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77155	Canola	plastid	61.28	69.01
Bra034388.1-P	Field mustard	plastid	61.65	67.74
PGSC0003DMT400050536	Potato	cytosol	58.17	67.73
AT2G28100.1	Thale cress	extracellular, golgi	62.39	67.19
CDY30508	Canola	plastid	60.92	66.94
Solyc11g069010.1.1	Tomato	extracellular, golgi	62.39	65.64
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	60.55	64.08
KRH22840	Soybean	plastid	61.83	62.99
TraesCS2A01G407300.1	Wheat	cytosol	51.74	60.65
EES12650	Sorghum	extracellular	55.96	59.45
KRH26522	Soybean	cytosol	30.09	58.99
TraesCS2B01G425000.1	Wheat	extracellular	55.41	58.64
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	55.41	58.53
TraesCS2D01G404300.1	Wheat	extracellular	55.05	58.25
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	6.61	49.32
Zm00001d002682_P001	Maize	extracellular	55.6	46.62
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	9.17	40.32
VIT_16s0022g02170.t01	Wine grape	extracellular, golgi, vacuole	44.4	25.16

Protein Annotations

KEGG:00511+3.2.1.51	EntrezGene:100255173	wikigene:100255173	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2
ProteinID:CCB44231	ProteinID:CCB44231.1	UniProt:F6GW96	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	EntrezGene:LOC100255173	wikigene:LOC100255173	PFAM:PF01120	PANTHER:PTHR10030
PANTHER:PTHR10030:SF27	SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI00015C9DD9
ArrayExpress:VIT_06s0061g00480	EnsemblPlantsGene:VIT_06s0061g00480	EnsemblPlants:VIT_06s0061g00480.t01	unigene:Vvi.16298	RefSeq:XP_002276131	RefSeq:XP_002276131.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:17955434..17959372

Molecular Weight (calculated)

61441.1 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.345

Length

545 amino acids

Sequence
(BLAST)

001: MMKNSHNPKT QNPKFATPTF ILFLLLLLSS TPLSSSSHRK PPPLPILPLP TSRQLSWQLG NMAMFLHFGP NTFTDSEWGS GHAHPSVFFP TRFNASQWIQ
101: VAKDSGFSRV ILTAKHHDGF CLWPSNYTDY SVRSSPWRGG TGDVVAELAE AAREAGIGLG LYLSPWDRHE ECYGKTLEYN EYYMGQMTEL LTRYGVIKHV
201: FLDGAKGAGE KDMEYFFDCW FSLIHQLQPE AVIFSDAGPD TRWIGDEAGV AGSTCWSLLN RSAVTIGGTD YPYLRRGDPC GHDWVPAECD VSIRPGWFWH
301: ASESPKSART LLDIYYSSVG RNCHFLLNVP PNTSGLISDE DIQVLQEFNE LRNAIFSNNL AENGIPSASS TRGPQFSCHN VLEEGIYTYW APEEDQSDWV
401: LYFDFEEFVS FNVLQVQEPI HMGQRVSEFH LDILDEKRDW KRLISGTTVG YKRLLRFPKV ETQGLRFVVD RSRADPLISY LGIHMDPFSI LSNISDTSLS
501: SQPYVNGSQP YPNGSQAHFN ASHAHLNGSQ FLRQISPNHS QVSTI

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.