Factsheet for PGSC0003DMT400050536

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069010.1.1	Tomato	extracellular, golgi	94.66	85.52
CDX77155	Canola	plastid	63.03	60.95
AT2G28100.1	Thale cress	extracellular, golgi	64.96	60.08
Bra034388.1-P	Field mustard	plastid	63.25	59.68
CDY30508	Canola	plastid	63.25	59.68
VIT_06s0061g00480.t01	Wine grape	plastid	67.73	58.17
TraesCS2A01G407300.1	Wheat	cytosol	57.69	58.06
KRH22840	Soybean	plastid	65.17	57.01
KRH26522	Soybean	cytosol	33.76	56.83
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	61.75	56.12
EES12650	Sorghum	extracellular	59.19	54.0
TraesCS2B01G425000.1	Wheat	extracellular	57.91	52.62
TraesCS2D01G404300.1	Wheat	extracellular	57.91	52.62
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	57.91	52.52
PGSC0003DMT400079675	Potato	extracellular, vacuole	45.73	44.4
Zm00001d002682_P001	Maize	extracellular	59.4	42.77
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	9.4	35.48
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	3.85	24.66

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M1BQG9	PFAM:PF01120	EnsemblPlantsGene:PGSC0003DMG400019638	PGSC:PGSC0003DMG400019638
EnsemblPlants:PGSC0003DMT400050536	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SMART:SM00812	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000295ADA2	:	:	:	:	:

Description

Alpha-l-fucosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400019638]

Coordinates

chr11:-:40865482..40869965

Molecular Weight (calculated)

53072.3 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.308

Length

468 amino acids

Sequence
(BLAST)

001: MALFLHFGTN TFTDSEWGTG HVDPSIFNPN LLNATQWVTV AKDFGFKRVV LTAKHHDGFC LWPSKYTDYS VKSSPWRNGV GDIVAELAEA ARNGGLELGV
101: YLSPWDRHEH CYGKTLEYNE YYMGQMTELL TRYGEIKYVF LDGAKGDGEK DMEYFFDDWF SLVHQLQPGA SIFSDVGPDT RWVGNENGVA GSTCWSLFNH
201: SAIKIGGYSD ARYSAEGDAF GQDWVPAECD VSIRTGWFWH ASEKPKSAMT LLDLYYKSVG RNCPLLLNVP PNSSGLISDE DIHVLKEFSE LRNSIFSHNL
301: AKFALLSASS TRGDPNDSQF SPKNVIEEGL YTYWAPDQGQ QSDWTLYLEF QQVITFNVLE LQEPIQMGQR IIEFHLDMLD ENGTWQHVVN GTTVGYRRLL
401: LFPTVKSHLL RFVIDKSKVF PLISHLGIYM DSYSVPQHVS DDAHTKSKFI NNLVFRRTAY NLSQSASI

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.