CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28100.1	CDY03088	AT2G01950.1	19000166
AT2G28100.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30508	Canola	plastid	95.25	92.94
AT2G28100.1	Thale cress	extracellular, golgi	83.26	79.64
PGSC0003DMT400050536	Potato	cytosol	60.95	63.03
VIT_06s0061g00480.t01	Wine grape	plastid	69.01	61.28
Solyc11g069010.1.1	Tomato	extracellular, golgi	64.05	59.85
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	61.16	57.48
KRH22840	Soybean	plastid	63.43	57.38
TraesCS2A01G407300.1	Wheat	cytosol	54.96	57.2
EES12650	Sorghum	extracellular	60.12	56.73
Os04t0560400-01	Rice	extracellular, mitochondrion, plasma membrane	59.92	56.2
TraesCS2B01G425000.1	Wheat	extracellular	58.47	54.95
TraesCS2D01G404300.1	Wheat	extracellular	58.47	54.95
KRH26522	Soybean	cytosol	29.75	51.8
HORVU2Hr1G096280.1	Barley	endoplasmic reticulum	7.02	46.58
Zm00001d002682_P001	Maize	extracellular	60.12	44.77
HORVU1Hr1G057300.1	Barley	cytosol, extracellular	9.09	35.48

Protein Annotations

KEGG:00511+3.2.1.51	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:50.3.2	GO:A0A078CJU5	EnsemblPlants:CDX77155
ProteinID:CDX77155	ProteinID:CDX77155.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00127770001	InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF27	SMART:SM00812
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EE4950	SEG:seg	:

Description

BnaC04g39500D

Coordinates

chrLK031809:+:1524891..1526473

Molecular Weight (calculated)

54443.4 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.310

Length

484 amino acids

Sequence
(BLAST)

001: MSLLTLLFFS SLLSLSKSTS LKPHPLPITP LPSSQQLQWQ LGSMAMFLHF GPNTFTDSEW GTGKADPSVF NPAHLNATQW VQIAKDSGFS RVILTAKHHD
101: GFCLWPSDYT DYSVKSSPWR NGTGDVVAEL ASAAAEAGIG LGLYLSPWDR HDGAYGKTVE YNEFYLSQMT ELLTKYGEIK EVWLDGAKGE GEKDMEYYFT
201: TWFSLIHQLQ PGAVIFSDAG PDVRWIGDEA GVAGSTCWSL FNRTDAKIGD TDPLYSQQGD GFGQDWVPAE CDVSIRPGWF WHALESPKPV AKLLDIYYNS
301: VGRNCLFLLN VPPNSSGLIS EQDIKVLKEF RELKNSIFAN NLARKAFINS SSVRGGQFGA ENVLEEGLDK YWAPEEKQKE WELYLEFRDP VSFNVLEVRE
401: PIQMGQRVAS FHLEMRNVKS GKWERVVRGT TVGFKRLLRF PRCESRSLKL VVEKVRADPL ISYIGIYMDK FSDSGRNSTL LNDS

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.