Factsheet for VIT_16s0022g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079675	Potato	extracellular, vacuole	34.82	69.5
KRH35416	Soybean	nucleus	35.03	69.2
KRG91403	Soybean	nucleus	34.93	68.99
Solyc03g006980.2.1	Tomato	extracellular	34.41	68.11
GSMUA_AchrUn_...	Banana	cytosol	27.96	64.98
Zm00001d021197_P001	Maize	extracellular	29.11	57.73
TraesCS5A01G308800.1	Wheat	extracellular, plasma membrane, plastid	28.9	57.68
Os09t0520800-01	Rice	extracellular, vacuole	29.52	57.49
HORVU5Hr1G080110.4	Barley	extracellular	28.69	57.26
TraesCS5B01G309700.1	Wheat	extracellular	28.48	57.2
Zm00001d006161_P001	Maize	extracellular	28.79	57.11
TraesCS5D01G316000.1	Wheat	extracellular	28.59	56.7
Solyc08g062280.1.1	Tomato	cytosol	10.71	56.59
TraesCS5B01G309300.1	Wheat	extracellular, plasma membrane, plastid	28.48	56.26
TraesCS5A01G309000.1	Wheat	extracellular, golgi	28.38	56.17
HORVU5Hr1G086390.1	Barley	extracellular, plasma membrane	28.79	55.85
EER99200	Sorghum	mitochondrion, plastid	29.52	49.65
VIT_06s0061g00480.t01	Wine grape	plastid	25.16	44.4

Protein Annotations

KEGG:00511+3.2.1.51	EntrezGene:100244570	wikigene:100244570	EntrezGene:100266889	wikigene:100266889	Gene3D:2.60.120.260
Gene3D:3.20.20.80	MapMan:50.3.2	ProteinID:CCB49244	ProteinID:CCB49244.1	UniProt:F6HAR2	EMBL:FN595506
GO:GO:0003674	GO:GO:0003824	GO:GO:0004560	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Galactose-bd-like_sf	InterPro:Glyco_hydro_29	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	EntrezGene:LOC100244570	wikigene:LOC100244570
EntrezGene:LOC100266889	wikigene:LOC100266889	PFAM:PF01120	PANTHER:PTHR10030	PANTHER:PTHR10030:SF37	SMART:SM00812
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI000210819D	ArrayExpress:VIT_16s0022g02170	EnsemblPlantsGene:VIT_16s0022g02170
EnsemblPlants:VIT_16s0022g02170.t01	unigene:Vvi.22303	RefSeq:XP_002270630	RefSeq:XP_002270630.2	RefSeq:XP_002270674	RefSeq:XP_002270674.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:14619551..14632511

Molecular Weight (calculated)

107954.0 Da

IEP (calculated)

5.847

GRAVY (calculated)

-0.354

Length

962 amino acids

Sequence
(BLAST)

001: MAKSLYFLCI IALVQLLEFI PSCMTQFATT PPLPVLPIPT ASQLKWQQRE IIMFFHFGMN TFTDSEWGTG QENPNLFNPT GLDARQWVST AAEAGFSLVI
101: LTAKHHDGFC LWPSKYTDHS VVSSPWKNGH GDVVRDLTNA AKAQGNIDVG LYLSPWDRHD QRYGKNQEYN EYYLAQLQEL LKQYGVIQEI WFDGAKGEDA
201: ANMSYYFEEW FEMVKELQSS INIFSDAGPD VRWVGNENGF SGNTSWSTIN RTLLSIGNGD NVGYLNTGDP QGTDWVPPEC DVSIRPGWFW HASEQPKELS
301: QLLEIYYNSV GRNCVLLFNV PPNSTGLISE IDVQRLMEFK KAIDTTFSTN LAEKSSVDAS SQRGGQNGGF GPENVLDDDN LWTYWAPDEG AAGQHWIEIK
401: AASGGLRFNV IRIQEPIGLG QRIIGHEVYA DGKLIVEGTT VGHKRLHRLG DVVEATVVKV QILESKGVPL VSSFGLHFDP FGQPNGTSVY KELELVITPP
501: LPILPLPKSS QLKWQERELI MFLHFGVNTF TDSEWGTGHE SPAIFNPTGL NASQWVEVAV EAGISLMILT AKHHDGFCLW PSKYTDHSVV SSPWRNGHGD
601: VVRDLVTAAE ARGVDVGLYL SPWDRHDRRY GKEKQYNEYY LAQLQELLHE YGNVREIWFD GAKGANAPNM SYDFGDWFAM VRELQTSINI FSDAGPDVRW
701: VGNEKGFAGS TCWSTINRTS LSIGNASIVD YINTGDPKGT DWLPPECDVS IRPGWFWHKS QKPKKLSKLL EIYYNSVGRN CVLLFNVPPN TTGLISETDV
801: QRLREFRNAV DTIFSTNLVE NGAIKASSRR GGKDSDFGPE NVLDSDHLWT FWAPREEDDE HWLEIKAANE GLRFNVVRIQ EAIGLGQRIK RHEIYADGKL
901: VGKGTTVGHK RLHRLGGVVH ARSLKVRILE SRGVPLVSSF GLHFDPFWHP PHGHSLSNGS RF

Best Arabidopsis Sequence Match ( AT2G28100.1 )
(BLAST)

001: MNSQITLFFF FFSILSLSQI SNSSSLLKPH PCPILPLPSS QQLQWQLGSM AMFLHFGPNT FTDSEWGTGK ANPSIFNPTH LNASQWVQIA KDSGFSRVIL
101: TAKHHDGFCL WPSEYTDYSV KSSQWRNGAG DVVAELASAA KEAGIGLGLY LSPWDRHEQC YGKTLEYNEF YLSQMTELLT KYGEIKEVWL DGAKGDGEKD
201: MEYFFDTWFS LIHQLQPKAV IFSDAGPDVR WIGDEAGLAG STCWSLFNRT NAKIGDTEPS YSQEGDGYGQ DWVPAECDVS IRPGWFWHAS ESPKPAVQLL
301: DIYYNSVGRN CLFLLNVPPN SSGLISEQDI KVLEEFSEMK NSIFSNNLAR KAFVNSSSIR GDQSSQFGPK NVLEEGLDKY WAPEENQNEW VLYLEFKDLV
401: SFNVLEIREP IHMGQRIASF HLETRKTGSG EWERVVSGTT VGNKRLLRFL NVVESRSLKL VVDKARTDPL ISYLGLYMDK FSGSSRNTTK ITITRTLKEE
501: QQLHDL

Arabidopsis Description

FUC1Alpha-L-fucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW72]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.