Factsheet for Solyc01g060170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21200_001	Banana	cytosol	56.6	61.22
TraesCS2B01G254100.1	Wheat	cytosol	49.69	57.25
Solyc12g099340.1.1	Tomato	nucleus	82.39	14.32
Os07t0490200-01	Rice	nucleus	61.64	10.57
KXG36244	Sorghum	nucleus	60.38	10.5
TraesCS2D01G237300.2	Wheat	cytosol	59.75	10.47
TraesCS2A01G229400.1	Wheat	nucleus	59.12	10.36
HORVU2Hr1G051690.3	Barley	cytosol	59.75	10.35
GSMUA_Achr8P10490_001	Banana	cytosol	54.09	10.26
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	51.57	8.47
Solyc04g056270.2.1	Tomato	nucleus	50.31	7.84
Solyc01g105230.2.1	Tomato	nucleus	48.43	7.4
Solyc05g015650.2.1	Tomato	nucleus	43.4	7.38
Solyc12g035520.1.1	Tomato	nucleus	42.77	6.99
Solyc01g057270.2.1	Tomato	nucleus	40.88	6.79
Solyc01g060140.2.1	Tomato	nucleus	5.66	1.35
GSMUA_Achr5P21190_001	Banana	cytosol	1.26	0.38
TraesCS2B01G254000.2	Wheat	cytosol	1.26	0.27

Protein Annotations

EnsemblPlants:Solyc01g060170.2.1	EnsemblPlantsGene:Solyc01g060170.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CG-1_dom	InterPro:IPR005559
PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	PFAM:PF03859	PFscan:PS51437	SMART:SM01076	UniParc:UPI0002762510
UniProt:K4AWC0	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:-:69623430..69629073

Molecular Weight (calculated)

18911.8 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.665

Length

159 amino acids

Sequence
(BLAST)

001: MESNRAGQLT GKEIHGFRTL QDLDIPSILE EAKMRWLRPN EIHAILCNYK YFNIFVKPVN LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH
101: LKVGNDERIH VYYAHGEDLP TFVRRCYWLL DKSLEHIVLV HYRETQEKVE TRASNFSLY

Best Arabidopsis Sequence Match ( AT3G16940.2 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQV

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.