Factsheet for Solyc12g099340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011979	Potato	cytosol	72.57	94.59
Solyc01g060170.2.1	Tomato	nucleus	14.32	82.39
Solyc01g060140.2.1	Tomato	nucleus	50.71	69.57
VIT_05s0077g01240.t01	Wine grape	cytosol	63.61	62.78
GSMUA_Achr5P21200_001	Banana	cytosol	9.73	60.54
KRH37009	Soybean	nucleus	59.56	59.82
KRH50762	Soybean	nucleus	60.0	59.61
KRH11981	Soybean	nucleus	59.23	59.5
AT3G16940.1	Thale cress	nucleus	54.54	59.05
KRH02327	Soybean	nucleus	58.47	58.03
CDY45590	Canola	cytosol	19.45	57.98
TraesCS2B01G254100.1	Wheat	cytosol	8.74	57.97
Bra022188.1-P	Field mustard	cytosol	52.9	56.94
CDX92108	Canola	cytosol	53.01	56.86
CDX95894	Canola	cytosol	52.68	56.51
GSMUA_Achr5P21190_001	Banana	cytosol	32.79	56.39
CDY58036	Canola	nucleus	55.52	55.28
CDY22778	Canola	nucleus	55.52	55.28
Bra038040.1-P	Field mustard	nucleus	55.52	55.28
CDY69566	Canola	nucleus	15.63	52.38
GSMUA_Achr8P10490_001	Banana	cytosol	45.14	49.28
TraesCS2D01G237300.2	Wheat	cytosol	44.59	44.98
TraesCS2A01G229400.1	Wheat	nucleus	44.48	44.87
HORVU2Hr1G051690.3	Barley	cytosol	44.48	44.34
KXG36244	Sorghum	nucleus	44.26	44.31
Os07t0490200-01	Rice	nucleus	44.59	44.01
TraesCS2B01G254000.2	Wheat	cytosol	34.97	42.9
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	42.51	40.19
Solyc04g056270.2.1	Tomato	nucleus	31.48	28.21
Solyc01g105230.2.1	Tomato	nucleus	30.93	27.21
Solyc01g057270.2.1	Tomato	nucleus	28.09	26.85
Solyc05g015650.2.1	Tomato	nucleus	27.43	26.84
Solyc12g035520.1.1	Tomato	nucleus	28.42	26.72

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:CG-1_dom	ncoils:Coil	GO:GO:0001077	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0045944	InterPro:IPR000048	InterPro:IPR002110
InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold
InterPro:Ig_E-set	UniProt:K4DHV5	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF03859	PFAM:PF12796
PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3
SMART:SM00015	SMART:SM00248	SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF81296
EnsemblPlantsGene:Solyc12g099340.1	EnsemblPlants:Solyc12g099340.1.1	UniParc:UPI000276A6BF	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:66523214..66531839

Molecular Weight (calculated)

103945.0 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.515

Length

915 amino acids

Sequence
(BLAST)

001: MESSVSGRLL GCEIHGFRTM QDLDIPNIME ESKMRWLRPN EIHAILCNHK YFNINVKPVN LPKSNLILSG TIVLFDRKML RNFRRDGYNW KKKKDGKTVK
101: EAHEHLKVGN DERIHVYYAH GEDNTTFVRR CYWLLDKTLE HVVLVHYRET QEVSSNSTVA QGSPAAPVSS GSALSDPADL SASWVLSGEL DSAVDQQYSA
201: SRHAHLEPNR DMTVQNHEQR LLEINTLEWD DLLAPGDPNK MVATQQAVGK TAYVQHTSYE QRNLCELNGY SFDGGVSSSL ERISTFNNSN EITFQTVDGQ
301: MTSSFEKNES GVMTVSTGDS LDSLNQDRLQ TQDSFGRWMN YLIKDSPESI DDPTPESSVS TGQSYAREQI FNITEILPAW APSTEETKIC VIGQFHGEQS
401: HLESSSLRCV CGDACFPAEV LQPGVYRCIV SPQTPGLVNI YLSFDGNKPI SQVMSFEFRA PSVHVWTEPP ENKSDWDEFR NQMRLAHLLF STSKSLNILS
501: SKIHQDLLKD AKKFAGKCSH IIDDWACLIK SIEDKKVSVP HAKDCLFELS LKTRLQEWLL ERVVEGCKIS EHDEQGQGVI HLCAILGYTW AVYPFSWSGL
601: SLDYRDKYGW TALHWAAYYG REKMVATLLS AGAKPNLVTD PTSENLGGCT ASDLASKNGH EGLGAYLAEK ALVAQFKDMT LAGNISGSLQ TTTESINPGN
701: FTEEELNLKD SLTAYRTAAD AAARIQAAFR ERALKVRTKA VESSNPEMEA RNIIAAMKIQ HAFRNYEMQK QLAAAARIQY RFRTWKMRKE FLHMRRQAIK
801: IQAVFRGFQV RRQYRKIIWS VGVLEKALFR WRLKRKGLRG LKLQSTQVTK PDDVEEDFFQ ASRKQAEERI ERSVVRVQAM FRSKQAQEQY RRMKLEHDKA
901: TLEYEGTLNP DTEMD

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.