Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022188.1-P | Field mustard | cytosol | 82.96 | 82.47 |
| CDX92108 | Canola | cytosol | 82.96 | 82.18 |
| CDX95894 | Canola | cytosol | 82.6 | 81.83 |
| CDY45590 | Canola | cytosol | 27.81 | 76.55 |
| GSMUA_Achr5P21200_001 | Banana | cytosol | 10.53 | 60.54 |
| TraesCS2B01G254100.1 | Wheat | cytosol | 9.82 | 60.14 |
| Solyc12g099340.1.1 | Tomato | nucleus | 59.05 | 54.54 |
| KRH50762 | Soybean | nucleus | 59.29 | 54.4 |
| VIT_05s0077g01240.t01 | Wine grape | cytosol | 59.41 | 54.15 |
| KRH11981 | Soybean | nucleus | 58.34 | 54.12 |
| KRH37009 | Soybean | nucleus | 58.34 | 54.12 |
| PGSC0003DMT400011979 | Potato | cytosol | 44.85 | 53.99 |
| KRH02327 | Soybean | nucleus | 58.7 | 53.8 |
| Solyc01g060140.2.1 | Tomato | nucleus | 40.47 | 51.27 |
| GSMUA_Achr5P21190_001 | Banana | cytosol | 32.07 | 50.94 |
| GSMUA_Achr8P10490_001 | Banana | cytosol | 46.27 | 46.66 |
| KXG36244 | Sorghum | nucleus | 47.57 | 43.98 |
| TraesCS2D01G237300.2 | Wheat | cytosol | 45.56 | 42.45 |
| TraesCS2A01G229400.1 | Wheat | nucleus | 45.44 | 42.34 |
| HORVU2Hr1G051690.3 | Barley | cytosol | 45.56 | 41.94 |
| Os07t0490200-01 | Rice | nucleus | 45.44 | 41.42 |
| Zm00001d021516_P003 | Maize | cytosol, nucleus, plasma membrane | 45.09 | 39.36 |
| TraesCS2B01G254000.2 | Wheat | cytosol | 34.67 | 39.28 |
| AT2G22300.1 | Thale cress | cytosol | 31.83 | 26.07 |
| AT5G64220.2 | Thale cress | nucleus | 30.41 | 24.48 |
| AT5G09410.3 | Thale cress | cytosol | 29.94 | 23.73 |
| AT1G67310.1 | Thale cress | cytosol | 28.4 | 23.62 |
Protein Annotations
| Gene3D:1.20.5.190 | Gene3D:1.25.40.20 | MapMan:15.5.26 | Gene3D:2.60.40.10 | EntrezGene:820950 | UniProt:A0A178VC09 |
| ProteinID:AEE75886.1 | ArrayExpress:AT3G16940 | EnsemblPlantsGene:AT3G16940 | RefSeq:AT3G16940 | TAIR:AT3G16940 | RefSeq:AT3G16940-TAIR-G |
| EnsemblPlants:AT3G16940.1 | TAIR:AT3G16940.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:CG-1_dom |
| ncoils:Coil | GO:GO:0001077 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0045893 | GO:GO:0045944 | GO:GO:0070417 | InterPro:IPR000048 | InterPro:IPR002110 |
| InterPro:IPR005559 | InterPro:IPR013783 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPT_dom | InterPro:IQ_motif_EF-hand-BS |
| InterPro:Ig-like_fold | InterPro:Ig_E-set | RefSeq:NP_188319.2 | ProteinID:OAP02855.1 | InterPro:P-loop_NTPase | PFAM:PF00612 |
| PFAM:PF01833 | PFAM:PF03859 | PFAM:PF12796 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50088 |
| PFscan:PS50096 | PFscan:PS50297 | PFscan:PS51437 | PANTHER:PTHR23335 | PANTHER:PTHR23335:SF3 | SMART:SM00015 |
| SMART:SM00248 | SMART:SM01076 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF81296 | UniParc:UPI0001E92D43 |
| SEG:seg | : | : | : | : | : |
Description
calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
Coordinates
chr3:+:5781418..5786309
Molecular Weight (calculated)
96183.0 Da
IEP (calculated)
8.052
GRAVY (calculated)
-0.528
Length
845 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.