Factsheet for Solyc01g060140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21190_001	Banana	cytosol	44.23	55.45
CDY45590	Canola	cytosol	25.19	54.72
Solyc12g099340.1.1	Tomato	nucleus	69.57	50.71
VIT_05s0077g01240.t01	Wine grape	cytosol	62.07	44.66
KRH37009	Soybean	nucleus	58.47	42.81
KRH11981	Soybean	nucleus	57.27	41.93
KRH50762	Soybean	nucleus	57.27	41.48
TraesCS2B01G254000.2	Wheat	cytosol	45.43	40.62
KRH02327	Soybean	nucleus	56.07	40.56
AT3G16940.1	Thale cress	nucleus	51.27	40.47
GSMUA_Achr8P10490_001	Banana	cytosol	50.67	40.33
Bra022188.1-P	Field mustard	cytosol	51.12	40.12
CDX92108	Canola	cytosol	51.27	40.09
CDX95894	Canola	cytosol	50.52	39.51
Bra038040.1-P	Field mustard	nucleus	53.97	39.17
CDY58036	Canola	nucleus	53.97	39.17
CDY22778	Canola	nucleus	53.97	39.17
TraesCS2D01G237300.2	Wheat	cytosol	45.43	33.41
TraesCS2A01G229400.1	Wheat	nucleus	45.43	33.41
KXG36244	Sorghum	nucleus	45.58	33.26
HORVU2Hr1G051690.3	Barley	cytosol	44.98	32.68
Os07t0490200-01	Rice	nucleus	43.93	31.61
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	45.13	31.09
Solyc05g015650.2.1	Tomato	nucleus	28.34	20.21
Solyc01g105230.2.1	Tomato	nucleus	31.03	19.9
Solyc04g056270.2.1	Tomato	nucleus	30.43	19.88
Solyc01g057270.2.1	Tomato	nucleus	28.04	19.54
Solyc12g035520.1.1	Tomato	nucleus	28.19	19.32
GSMUA_Achr5P21200_001	Banana	cytosol	1.5	6.8
Solyc01g060170.2.1	Tomato	nucleus	1.35	5.66
TraesCS2B01G254100.1	Wheat	cytosol	0.9	4.35
CDY69566	Canola	nucleus	0.9	2.2

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0001077	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0045944	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR013783	InterPro:IPR020683
InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K4AWB7	InterPro:P-loop_NTPase
PFAM:PF00612	PFAM:PF13637	PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PANTHER:PTHR23335
PANTHER:PTHR23335:SF3	SMART:SM00015	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF81296
EnsemblPlantsGene:Solyc01g060140.2	EnsemblPlants:Solyc01g060140.2.1	UniParc:UPI0002762330	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:69595997..69599980

Molecular Weight (calculated)

75223.1 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.430

Length

667 amino acids

Sequence
(BLAST)

001: MTTDNGDMQD GSSSMARAPI ASLESFVGQV AGSDAVNFNP LNDMSFRSGD GQMTSNFQKK ESGVMTVGAG DSFDSLNKDG LQTQDSFGRW INYFISDSSG
101: SADELMTPES SVTIDQSYVM QQTFNITEIS PSWALSTEET KILVVGHFPG RQSPLAKSNL FCVCADVCFT AEFVQSGVYR CVISPQAPGL VNLYLSLDGN
201: TPISQVMTFE FRAPSAHKWT DPLEDQSNWD EFRVQMRLAH LLFSTSKSLS IFSSKVHQNS LKDAKKFVRK CAYITNNWAY LIKSIEGRKV PSMHAKDCLF
301: ELSLQTKFHE WLLERVIEGC KTSERDEQGQ GVIHLCAILG YTWAIYPFTW SGLSVDYRDK HGWTALHWAA HYGREKMVAT LLSAGANPNL VTDPNSENPD
401: GYTAADLASK NGFDGLGAYL AEKALVAHFE AMTLAGNVSG SLQTTTEPIN PENFTEEELY LKDTLAAYRT AADAAARIQA AFREQSFKLQ TKAVESVNQE
501: TEARNIIAAM KIQHAFRNYE SRKKLAAAAR IQYRFRTWKM RKDFLAMRRH AIKIQAVFRG YKERKQYRKI VWSVGVLEKA VLRWRLKRKG FRGLQVQSSE
601: SVDIKPDGEV EDFFRASRKQ AEERVERSVV RVQAMFRSKR AQEEYSRMKM AHNNASLEYK RLINPDN

Best Arabidopsis Sequence Match ( AT3G16940.3 )
(BLAST)

001: MLEEAKSRWL RPNEIHAILY NPKYFTINVK PVNLPNSGRI ILFDRKMLRN FRKDGHNWKK KKDGRTVKEA HEHLKVGNEE RIHVYYAHGE DNTTFVRRCY
101: WLLDKARENI VLVHYRDTQE AATTSGDSIS SPISVSEQTF PNRVAAEDID TVVRNHDISL HDINTLDWDE LLVPTDLNNQ SAPTVDNLSY FTEPLQNAAN
201: GTAEHGNATV ADGSLDALLN DGPQSRESFG RWMNSFISES NGSLEDPSFE PMVMPRQDPL APQAVFHSHS NIPEQVFNIT DVSPAWAYSS EKTKILVTGF
301: LHDSYQHLER SNLYCVCGDF CVPAEYLQAG VYRCIIPPHS PGMVNLYLSA DGHKPISQCF RFEHRAVPVL DKTVPEDNQD SKWEEFEFQV RLSHLLFTSS
401: NKLNVLSSKI SPHNLRDAKK LASKTNHLLN SWAYLVKSIQ GNKVSFDQAK DHLFELSLKN RLKEWLMEKV LEGRNTLDYD SKGLGVIHLC ASLGYTWSVQ
501: LFSLSGLSLN FRDKQGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDSTK DNLGGCMAAD LAQQNGYDGL AAYLAEKCLV AQFRDMKIAG NITGDLEACK
601: AEMLNQGTLP EDEQSLKDAL AAYRTAAEAA ARIQGAFREK ALKAARSSVI QFANKEEEAK SIIAAMKIQN AFRKYDTRRK IEAAYRIQCR FQTWKIRREY
701: LNMRRQAIRI QAAFRGLQAR RQYKKILWSV GVLEKAVLRW RQKRKGFRGL QVAAEEDSPG EAQEDFYKTS QRQAEERLER SVVRVQAMFR SKKAQQDYRR
801: MKLTHEEAQL EYGCLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.