Factsheet for Solyc05g015650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084738	Potato	cytosol	66.84	91.37
Solyc12g035520.1.1	Tomato	nucleus	72.3	69.48
VIT_01s0010g03850.t01	Wine grape	nucleus	61.39	59.3
GSMUA_AchrUn_...	Banana	cytosol	6.2	56.86
KRH58784	Soybean	nucleus	59.68	56.77
VIT_14s0036g00610.t01	Wine grape	plastid	8.98	56.76
GSMUA_Achr8P00680_001	Banana	mitochondrion	8.34	56.12
KRH42689	Soybean	cytosol	57.86	56.06
Bra034007.1-P	Field mustard	nucleus	53.58	49.51
AT1G67310.1	Thale cress	cytosol	53.37	49.11
CDY12637	Canola	nucleus	53.9	48.74
CDY51184	Canola	nucleus	53.37	48.68
CDY07431	Canola	nucleus	49.73	48.19
Bra004217.1-P	Field mustard	nucleus	51.34	48.14
Bra004096.1-P	Field mustard	nucleus	49.73	47.79
CDY28897	Canola	nucleus	49.52	47.44
CDY01799	Canola	nucleus	51.66	47.12
Solyc01g060170.2.1	Tomato	nucleus	7.38	43.4
Zm00001d003958_P013	Maize	nucleus	44.28	42.29
Os04t0388500-01	Rice	nucleus	45.35	42.27
TraesCS2A01G283800.1	Wheat	nucleus	46.2	42.06
TraesCS2B01G300800.2	Wheat	nucleus	46.2	42.02
Zm00001d009281_P001	Maize	cytosol	8.88	41.92
OQU81398	Sorghum	nucleus	44.49	41.81
HORVU2Hr1G069950.6	Barley	nucleus	45.67	41.7
TraesCS2D01G282800.6	Wheat	nucleus	45.88	41.65
EES01985	Sorghum	nucleus	37.43	41.42
Zm00001d025235_P004	Maize	nucleus	43.96	40.98
Os01t0923600-02	Rice	nucleus	36.15	38.5
TraesCS3A01G433300.2	Wheat	nucleus	33.69	38.37
TraesCS3B01G469100.2	Wheat	cytosol	32.94	38.26
CDX96099	Canola	nucleus	50.91	37.84
TraesCS3D01G426700.5	Wheat	nucleus	33.05	37.78
Zm00001d042313_P004	Maize	nucleus	35.51	37.22
HORVU3Hr1G094860.7	Barley	cytosol, nucleus, plastid	33.26	36.8
Solyc01g057270.2.1	Tomato	nucleus	32.62	31.87
Solyc04g056270.2.1	Tomato	nucleus	33.58	30.75
Solyc01g105230.2.1	Tomato	nucleus	34.01	30.58
Solyc01g060140.2.1	Tomato	nucleus	20.21	28.34
Solyc12g099340.1.1	Tomato	nucleus	26.84	27.43
Bra004218.1-P	Field mustard	nucleus	0.11	0.34

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:CG-1_dom	GO:GO:0001077	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0045944	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559
InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770	InterPro:IPT_dom	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold
InterPro:Ig_E-set	UniProt:K4BYT1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF01833	PFAM:PF03859
PFAM:PF13637	PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335
PANTHER:PTHR23335:SF1	SMART:SM00015	SMART:SM00248	SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF52540
SUPFAM:SSF81296	EnsemblPlantsGene:Solyc05g015650.2	EnsemblPlants:Solyc05g015650.2.1	UniParc:UPI0002766A9C	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:11602390..11617832

Molecular Weight (calculated)

105310.0 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.541

Length

935 amino acids

Sequence
(BLAST)

001: MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSSE PSQKPPSGSL FLYNKRVLRF FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE
101: QNPNFQRRSY WMLDPAYDHI VLVHYRDIIE GRQNPAFMSE SSPISSAFSP SPSSYSTPHT GSTGIASECY EQYQNQSSPG EICSDAIINN NGTTDTIGRT
201: EEVISSPGLE MCQALRRLEE QLSLNDDSLK EIDPLYGDAI NDDSSLIQMQ GNSNRLLLQH HSGESSESHH RDLTQDAHVW KDMLDHYGVS AAAESQTKYL
301: HKLDENAMLQ TLSERRAIEA YESYKWRDFS DKETQTAPVQ AFKQLEDFKY PTYPPDITTF GSNPDEYTTI FDQDQIGTSL EDEMSLTIAQ KQKFTIRHIS
401: PDWGYSSEPT KIVIIGSFLC NPSECTWTCM FGDIEVPIQI IQEGVICCQA PRHLPGKVTL CVTSGNRESC SEVREFEYRV KPDDCARNNQ PDVEGAYRST
501: DELLLLVRFV QLLLSDLSVQ KRESSELGND LLEKSKASED SWSQIIESLL FGTSVPMVTI DWLLQELLKD KFQQWLCSKL QQKDNQIDCS LSKKEQGIIH
601: MVAGLGFEWA LHPILNAGVS ANFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP SSRDPVGKTA ASIVALTSHL SSLTLEESEL SKGTADVEAE
701: RTISSISNTS ATINEDQRSL KDTLAAVRNA AQAAARIQSA FRAHSFRKRQ QREFGVSATT SVDEYGILSN DIQGLSAASK LAFRNPREYN SAALAIQKKY
801: RGWKGRKDFL AFRQKVVKIQ AHVRGYQVRK QYKVCWAVGI LEKVVLRWRR RGVGLRGFRH DTESIDEIED EDILKVFRKQ KVDAALDEAV SRVLSMVESP
901: GARQQYHRIL EKYRQSKAEL EGADSETAST AHGHV

Best Arabidopsis Sequence Match ( AT1G67310.1 )
(BLAST)

0001: MSSVAEDNSF TCDIATIFVA ICRNPPANPS DSLFQYEIST LYQEAHSRWL KPPEVLFILQ NHESLTLTNT APQRPTSGSL LLFNKRVLKF FRKDGHQWRR
0101: KRDGRAIAEA HERLKVGNAE ALNCYYAHGE QDPTFRRRIY WMLDPEYEHI VLVHYRDVSE REEGQQTGGQ VYQFAPILST QNVSYNQYIG DSSDIYQQSS
0201: TSPGVAEVNS NLEGSASSSE FGQALKMLKE QLSIGDEHVN SVDPHYIQPE SLDSLQFLEY SDIDHLAQPT TVYQRPENNK LERCYGGNFG AQYSAKNDSN
0301: KLERCYGGYV GGAEYHSSNL MLVKNGSGPS GGTGGSGDQG SESWKDVLEA CEASIPLNSE GSTPSSAKGL LAGLQEDSNW SYSNQVDQST FLLPQDLGSF
0401: QLPASYSALV APENNGEYCG MMEDGMKIGL PFEQEMRVTG AHNQKFTIQD ISPDWGYANE TTKVIIIGSF LCDPTESTWS CMFGNAQVPF EIIKEGVIRC
0501: EAPQCGPGKV NLCITSGDGL LCSEIREFEY REKPDTCCPK CSEPQTSDMS TSPNELILLV RFVQTLLSDR SSERKSNLES GNDKLLTKLK ADDDQWRHVI
0601: GTIIDGSASS TSTVDWLLQE LLKDKLDTWL SSRSCDEDYI TCSLSKQEQG IIHMVAGLGF EWAFYPILAH GVNVDFRDIK GWSALHWAAQ FGSEKMVAAL
0701: IASGASAGAV TDPSRQDPNG KTAASIAASN GHKGLAGYLS EVALTNHLSS LTLEETENSK DTAQVQTEKT LNSISEQSPS GNEDQVSLKD TLAAVRNAAQ
0801: AAARIQAAFR AHSFRKRKQR EAALVACLQE YGMYCEDIEG ISAMSKLTFG KGRNYNSAAL SIQKNFRGYK DRKCFLELRQ KVVKIQAHVR GYQIRKNYKV
0901: ICWAVRILDK VVLRWRRKGV GLRGFRQDVE STEDSEDEDI LKVFRKQKVD VAVNEAFSRV LSMSNSPEAR QQYHRVLKRY CQTKAELGKT ETLVGEDDDG
1001: LFDIADMEYD TLFSLP

Arabidopsis Description

CAMTA4Calmodulin-binding transcription activator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.