Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96099 | Canola | nucleus | 99.66 | 23.37 |
| HORVU3Hr1G094860.7 | Barley | cytosol, nucleus, plastid | 1.69 | 0.59 |
| Zm00001d009281_P001 | Maize | cytosol | 0.34 | 0.51 |
| AT1G67310.1 | Thale cress | cytosol | 1.69 | 0.49 |
| Bra004096.1-P | Field mustard | nucleus | 1.02 | 0.31 |
| Bra004217.1-P | Field mustard | nucleus | 1.02 | 0.3 |
| Bra034007.1-P | Field mustard | nucleus | 1.02 | 0.3 |
| TraesCS3B01G469100.2 | Wheat | cytosol | 0.68 | 0.25 |
| TraesCS3D01G426700.5 | Wheat | nucleus | 0.68 | 0.24 |
| TraesCS3A01G433300.2 | Wheat | nucleus | 0.68 | 0.24 |
| EES01985 | Sorghum | nucleus | 0.68 | 0.24 |
| Zm00001d042313_P004 | Maize | nucleus | 0.68 | 0.22 |
| Solyc12g035520.1.1 | Tomato | nucleus | 0.68 | 0.21 |
| Zm00001d003958_P013 | Maize | nucleus | 0.68 | 0.2 |
| TraesCS2B01G300800.2 | Wheat | nucleus | 0.68 | 0.19 |
| TraesCS2D01G282800.6 | Wheat | nucleus | 0.68 | 0.19 |
| PGSC0003DMT400084738 | Potato | cytosol | 0.34 | 0.15 |
| Bra038534.1-P | Field mustard | nucleus | 0.34 | 0.11 |
| Solyc05g015650.2.1 | Tomato | nucleus | 0.34 | 0.11 |
| KRH42689 | Soybean | cytosol | 0.34 | 0.1 |
| VIT_01s0010g03850.t01 | Wine grape | nucleus | 0.34 | 0.1 |
| KRH58784 | Soybean | nucleus | 0.34 | 0.1 |
| OQU81398 | Sorghum | nucleus | 0.34 | 0.1 |
| Zm00001d025235_P004 | Maize | nucleus | 0.34 | 0.1 |
| Bra009382.1-P | Field mustard | nucleus | 0.34 | 0.1 |
| HORVU2Hr1G069950.6 | Barley | nucleus | 0.34 | 0.1 |
| TraesCS2A01G283800.1 | Wheat | nucleus | 0.34 | 0.1 |
| Bra037769.1-P | Field mustard | cytosol | 0.34 | 0.1 |
| Bra030248.1-P | Field mustard | nucleus | 0.34 | 0.1 |
| Bra038040.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| GSMUA_Achr8P00680_001 | Banana | mitochondrion | 0.0 | 0.0 |
| VIT_14s0036g00610.t01 | Wine grape | plastid | 0.0 | 0.0 |
| Os04t0388500-01 | Rice | nucleus | 0.0 | 0.0 |
| Bra022188.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Os01t0923600-02 | Rice | nucleus | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra004218.1 | EnsemblPlants:Bra004218.1-P | EnsemblPlantsGene:Bra004218 | Gene3D:4.10.1060.10 | InterPro:IPR001876 | InterPro:Znf_RanBP2 |
| InterPro:Znf_RanBP2_sf | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF35 | PFAM:PF00641 | SEG:seg | SMART:SM00547 |
| SUPFAM:SSF90209 | UniParc:UPI00025415E8 | UniProt:M4CJ34 | MapMan:35.1 | : | : |
Description
AT1G67325 (E=7e-133) | binding / zinc ion binding
Coordinates
chrA07:-:17485390..17487199
Molecular Weight (calculated)
32114.3 Da
IEP (calculated)
9.063
GRAVY (calculated)
-0.974
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQVDNRNSS AAKRARTDGG RREDDWTCPS CGNVNFSFRT TCNMRNCTQS RPADHNGKSA PRPMQPHQSF SSPGRYLGSG APSPVLMGGS PYGSSLFNGS
101: SMSPYDVPFS GGSPYHFNYN SRFPPAGPHY RPFHMSGPPS PYHGRSMMGS GMYGMALPPM DRFGFGMAMS PAAAAAMMPR PGGYFADEKS QKRDLSREND
201: WACPNCGNVN FSFRTMCNMR KCNTPKPGPQ LQQCGSSDKT SNQKAPEGSW KCDSCGNINY PFRSKCNRQN CGADKPGNQS NESPSNAPED NDKPV
101: SMSPYDVPFS GGSPYHFNYN SRFPPAGPHY RPFHMSGPPS PYHGRSMMGS GMYGMALPPM DRFGFGMAMS PAAAAAMMPR PGGYFADEKS QKRDLSREND
201: WACPNCGNVN FSFRTMCNMR KCNTPKPGPQ LQQCGSSDKT SNQKAPEGSW KCDSCGNINY PFRSKCNRQN CGADKPGNQS NESPSNAPED NDKPV
001: MSQVDNRNSS AAKRARTDGG RREDDWICPS CGNVNFSFRT TCNMRNCTQP RPADHNGKSA PKPMQHQQGF SSPGAYLGSG GPPPVYMGGS PYGSPLFNGS
101: SMPPYDVPFS GGSPYHFNYN SRMPAGAHYR PLHMSGPPPY HGGSMMGSGG MYGMPPPIDR YGLGMAMGPG SAAAMMPRPR FYPDEKSQKR DSTRDNDWTC
201: PNCGNVNFSF RTVCNMRKCN TPKPGSQQGG SSDKISKQNA PEGSWKCDNC GNINYPFRSK CNRQNCGADK PGDRSNGSPS RAPEENDQ
101: SMPPYDVPFS GGSPYHFNYN SRMPAGAHYR PLHMSGPPPY HGGSMMGSGG MYGMPPPIDR YGLGMAMGPG SAAAMMPRPR FYPDEKSQKR DSTRDNDWTC
201: PNCGNVNFSF RTVCNMRKCN TPKPGSQQGG SSDKISKQNA PEGSWKCDNC GNINYPFRSK CNRQNCGADK PGDRSNGSPS RAPEENDQ
Arabidopsis Description
RanBP2-type zinc finger protein At1g67325 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.