Factsheet for VIT_01s0010g03850.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g00610.t01	Wine grape	plastid	11.88	77.7
KRH58784	Soybean	nucleus	65.08	64.09
KRH42689	Soybean	cytosol	63.53	63.73
PGSC0003DMT400084738	Potato	cytosol	43.8	61.99
Solyc05g015650.2.1	Tomato	nucleus	59.3	61.39
GSMUA_AchrUn_...	Banana	cytosol	6.4	60.78
Solyc12g035520.1.1	Tomato	nucleus	56.82	56.53
GSMUA_Achr8P00680_001	Banana	mitochondrion	8.06	56.12
CDY07431	Canola	nucleus	50.52	50.67
Bra034007.1-P	Field mustard	nucleus	52.89	50.59
AT1G67310.1	Thale cress	cytosol	52.89	50.39
Bra004096.1-P	Field mustard	nucleus	50.41	50.15
Bra004217.1-P	Field mustard	nucleus	51.24	49.75
CDY51184	Canola	nucleus	52.58	49.66
CDY12637	Canola	nucleus	53.0	49.61
CDY28897	Canola	nucleus	50.0	49.59
CDY01799	Canola	nucleus	52.38	49.46
Zm00001d009281_P001	Maize	cytosol	9.4	45.96
Zm00001d003958_P013	Maize	nucleus	46.18	45.66
OQU81398	Sorghum	nucleus	46.18	44.92
Os04t0388500-01	Rice	nucleus	45.25	43.67
Zm00001d025235_P004	Maize	nucleus	45.25	43.67
TraesCS2A01G283800.1	Wheat	nucleus	46.28	43.62
HORVU2Hr1G069950.6	Barley	nucleus	46.07	43.55
TraesCS2B01G300800.2	Wheat	nucleus	46.18	43.48
TraesCS2D01G282800.6	Wheat	nucleus	45.97	43.2
EES01985	Sorghum	nucleus	37.6	43.08
TraesCS3B01G469100.2	Wheat	cytosol	33.26	40.0
Os01t0923600-02	Rice	nucleus	36.16	39.86
TraesCS3A01G433300.2	Wheat	nucleus	33.78	39.83
TraesCS3D01G426700.5	Wheat	nucleus	33.57	39.73
CDX96099	Canola	nucleus	50.72	39.03
Zm00001d042313_P004	Maize	nucleus	35.64	38.68
HORVU3Hr1G094860.7	Barley	cytosol, nucleus, plastid	33.37	38.22
VIT_00s0805g00010.t01	Wine grape	cytosol, nucleus, plastid	2.17	35.0
VIT_05s0020g00630.t01	Wine grape	nucleus	34.92	33.2
VIT_05s0077g01240.t01	Wine grape	cytosol	27.69	28.91
VIT_07s0141g00250.t01	Wine grape	nucleus	35.33	25.28
Bra004218.1-P	Field mustard	nucleus	0.1	0.34

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	EntrezGene:100260828	wikigene:100260828	MapMan:15.5.26	Gene3D:2.60.40.10
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI27676	ProteinID:CBI27676.3	InterPro:CG-1_dom
UniProt:D7TB03	EMBL:FN595754	GO:GO:0001077	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0043565
GO:GO:0045944	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683
InterPro:IPR036770	InterPro:IPT_dom	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100260828
wikigene:LOC100260828	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF01833	PFAM:PF03859	PFAM:PF12796
PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF1
SMART:SM00015	SMART:SM00248	SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF81296
UniParc:UPI0001BE31FB	ArrayExpress:VIT_01s0010g03850	EnsemblPlantsGene:VIT_01s0010g03850	EnsemblPlants:VIT_01s0010g03850.t01	unigene:Vvi.3259	RefSeq:XP_002270865
RefSeq:XP_002270865.2	RefSeq:XP_010656058.1	RefSeq:XP_010656066.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:21202170..21215499

Molecular Weight (calculated)

108327.0 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.543

Length

968 amino acids

Sequence
(BLAST)

001: MSGFDFNDLL KEAQIRWLKP AEVLFILQNY EKHQLTQEPP QKPTSGSLFL FNKRVLRFFR KDGHSWRKKK DGRTVGEAHE RLKVGTVETI NCYYAHGEQN
101: PSFQRRSYWM LDPAYEHIVL VHYREISEGR HSPGSNSLLS SGSTQTQSPS SYNSQIPGST SAVSELYDSP QNVCSPGSVE VSSEVVMKSN VREHLDRING
201: IGDFGNSSEL EVSQALRRLE EQLSLNDDSL EAIDAFQSQN ENMNGLETLE YERKMSKQDQ HAVLLSGPEY TVHDQHYTGY AGCSTDDLML PQDAGDNREH
301: YHHQSTVEGR DTLSWEEIME FCKSSSGVDS KEKHKSYGNE RPLSSSGRGA AEKQQNSHWL NVDGTNSESS SILLPSEVEN LNFPEYKTNT HAVNSDYYRM
401: LFDEGQIEVP LESGPSLTLA QKQRFTICEI SPEWGFSSET TKVIIAGSFL CHPSECAWTC MFGDIEVPVQ IIQEGVICCQ APPHPPGKVT LCITSGNRES
501: CSEVREFEYH AKTSSCTHCN LSQTEATKSP EELLLLARFV QMLLFDPLMH RRDGIESGID LLIKSKADED SWDCIIEALL FGSGTSSSTV DWLLQELLKD
601: KLHQWLSSRS REGCESFGCS LSKKEQGMIH MIAGLGFEWA LNPILNTGVS INFRDINGWT ALHWAARFGR EKMVAALIAS GASAGAVTDP SPQDPTGKTA
701: ASIASTSGHK GLAGYLSEVA VTSHLSSLTL EESELSKGSA EVEAEITVNN ISKGGLAASE DQIPLKDALA AVRNTTQAAA RIQAAFRAHS FRQKQQREAD
801: APYVDEYGIS SDDIQELSAM SKLAFRNSAA LSIQKKYRGW KGRKDFLTLR QKVVKIQAHV RGYHVRKNYK VICWAVGILD KVILRWRRRG AGLRGFRPES
901: EPIDENEDED IRKAFRRQKV DGAINEAVSR VLSMVESPEA REQYHRVLER FHQAKQSHFR HDSAFEAD

Best Arabidopsis Sequence Match ( AT1G67310.1 )
(BLAST)

0001: MSSVAEDNSF TCDIATIFVA ICRNPPANPS DSLFQYEIST LYQEAHSRWL KPPEVLFILQ NHESLTLTNT APQRPTSGSL LLFNKRVLKF FRKDGHQWRR
0101: KRDGRAIAEA HERLKVGNAE ALNCYYAHGE QDPTFRRRIY WMLDPEYEHI VLVHYRDVSE REEGQQTGGQ VYQFAPILST QNVSYNQYIG DSSDIYQQSS
0201: TSPGVAEVNS NLEGSASSSE FGQALKMLKE QLSIGDEHVN SVDPHYIQPE SLDSLQFLEY SDIDHLAQPT TVYQRPENNK LERCYGGNFG AQYSAKNDSN
0301: KLERCYGGYV GGAEYHSSNL MLVKNGSGPS GGTGGSGDQG SESWKDVLEA CEASIPLNSE GSTPSSAKGL LAGLQEDSNW SYSNQVDQST FLLPQDLGSF
0401: QLPASYSALV APENNGEYCG MMEDGMKIGL PFEQEMRVTG AHNQKFTIQD ISPDWGYANE TTKVIIIGSF LCDPTESTWS CMFGNAQVPF EIIKEGVIRC
0501: EAPQCGPGKV NLCITSGDGL LCSEIREFEY REKPDTCCPK CSEPQTSDMS TSPNELILLV RFVQTLLSDR SSERKSNLES GNDKLLTKLK ADDDQWRHVI
0601: GTIIDGSASS TSTVDWLLQE LLKDKLDTWL SSRSCDEDYI TCSLSKQEQG IIHMVAGLGF EWAFYPILAH GVNVDFRDIK GWSALHWAAQ FGSEKMVAAL
0701: IASGASAGAV TDPSRQDPNG KTAASIAASN GHKGLAGYLS EVALTNHLSS LTLEETENSK DTAQVQTEKT LNSISEQSPS GNEDQVSLKD TLAAVRNAAQ
0801: AAARIQAAFR AHSFRKRKQR EAALVACLQE YGMYCEDIEG ISAMSKLTFG KGRNYNSAAL SIQKNFRGYK DRKCFLELRQ KVVKIQAHVR GYQIRKNYKV
0901: ICWAVRILDK VVLRWRRKGV GLRGFRQDVE STEDSEDEDI LKVFRKQKVD VAVNEAFSRV LSMSNSPEAR QQYHRVLKRY CQTKAELGKT ETLVGEDDDG
1001: LFDIADMEYD TLFSLP

Arabidopsis Description

CAMTA4Calmodulin-binding transcription activator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.