Factsheet for PGSC0003DMT400084738

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015650.2.1	Tomato	nucleus	91.37	66.84
VIT_14s0036g00610.t01	Wine grape	plastid	13.45	62.16
VIT_01s0010g03850.t01	Wine grape	nucleus	61.99	43.8
KRH42689	Soybean	cytosol	60.96	43.21
KRH58784	Soybean	nucleus	61.26	42.62
Zm00001d009281_P001	Maize	cytosol	12.28	42.42
AT1G67310.1	Thale cress	cytosol	57.31	38.58
Bra034007.1-P	Field mustard	nucleus	55.7	37.65
CDY12637	Canola	nucleus	55.85	36.94
Bra004217.1-P	Field mustard	nucleus	53.8	36.91
CDY07431	Canola	nucleus	52.05	36.89
CDY28897	Canola	nucleus	52.63	36.89
CDY51184	Canola	nucleus	55.26	36.88
Bra004096.1-P	Field mustard	nucleus	52.05	36.59
CDY01799	Canola	nucleus	53.22	35.51
OQU81398	Sorghum	nucleus	46.93	32.26
Zm00001d003958_P013	Maize	nucleus	45.76	31.97
TraesCS2B01G300800.2	Wheat	nucleus	47.66	31.71
TraesCS2A01G283800.1	Wheat	nucleus	47.51	31.65
TraesCS2D01G282800.6	Wheat	nucleus	47.37	31.46
HORVU2Hr1G069950.6	Barley	nucleus	47.08	31.45
Os04t0388500-01	Rice	nucleus	46.05	31.41
Zm00001d025235_P004	Maize	nucleus	45.47	31.01
EES01985	Sorghum	nucleus	36.26	29.35
CDX96099	Canola	nucleus	53.8	29.25
PGSC0003DMT400038758	Potato	cytosol	34.65	29.08
TraesCS3B01G469100.2	Wheat	cytosol	32.31	27.45
Os01t0923600-02	Rice	nucleus	35.23	27.45
PGSC0003DMT400011979	Potato	cytosol	27.78	27.07
TraesCS3A01G433300.2	Wheat	nucleus	32.16	26.8
TraesCS3D01G426700.5	Wheat	nucleus	31.73	26.53
HORVU3Hr1G094860.7	Barley	cytosol, nucleus, plastid	32.31	26.15
Zm00001d042313_P004	Maize	nucleus	33.92	26.01
Bra004218.1-P	Field mustard	nucleus	0.15	0.34
GSMUA_Achr8P00680_001	Banana	mitochondrion	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000048
InterPro:IPR002110	InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770	InterPro:IPT_dom	InterPro:IQ_motif_EF-hand-BS
InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1D7Y1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF01833
PFAM:PF13637	EnsemblPlantsGene:PGSC0003DMG400034313	PGSC:PGSC0003DMG400034313	EnsemblPlants:PGSC0003DMT400084738	PFscan:PS50088	PFscan:PS50096
PFscan:PS50297	PANTHER:PTHR23335	PANTHER:PTHR23335:SF1	SMART:SM00015	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF52540	SUPFAM:SSF81296	UniParc:UPI0002964F9F	SEG:seg	:	:

Description

Calmodulin-binding transcription activator (Camta), plants [Source:PGSC_GENE;Acc:PGSC0003DMG400034313]

Coordinates

chr5:-:14418005..14425294

Molecular Weight (calculated)

76463.0 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.415

Length

684 amino acids

Sequence
(BLAST)

001: MWKDMLDHYG VSASAESQTK YLHKLDENAM LQTSSERRAI EAYESYKWCD FSDREAQTAP VPAFKQLEDF KYTTYPPAIT TFGSNPDEYT TIFDQDQIGT
101: SLEDEMSLTI AQTQKFTIRH ISPDWGYSSE ATKIVIIGSF LCNPSECTWT CMFGDIEVPV QIIQEGVICC QAPRHLPGKV TLCVTSGNRE SCSEVREFEY
201: RVKPDDCARN NQPDVEGAYG STEELLLLVR FVQLLLSDLS VQKGESSELG NDFLEKSKAS EDSWSQIIES LLFGSSMPMV TIDWLLQELL KDKFQQWLSC
301: KLQQKDNQIG CSLSKKEQGV IHMVAGLGFE WALHPILNAG VSVNFRDING WTALHWAARF GREKMVASLI ASGASAGAVT DPSSRDPVGK TAASIASSCD
401: HKGLAGYLSE VALTSHLSSL TLEESELSKG TADVEAERTI SSISNTSATI NEDQRSLNDT LAAVRNAAQA AARIQSAFRA HSFRKRQERE FGVSASGDEY
501: GILSNDIQGL SAASKLAFRN PRDYNSAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDTESI
601: DEIEDEDILK VFRKQKVDAA LDEAVSRVLS MVESPGARQQ YHRILEKYRQ AKAELEGADS ETASTAHGDM SNMENDDIYQ FPSY

Best Arabidopsis Sequence Match ( AT1G67310.1 )
(BLAST)

0001: MSSVAEDNSF TCDIATIFVA ICRNPPANPS DSLFQYEIST LYQEAHSRWL KPPEVLFILQ NHESLTLTNT APQRPTSGSL LLFNKRVLKF FRKDGHQWRR
0101: KRDGRAIAEA HERLKVGNAE ALNCYYAHGE QDPTFRRRIY WMLDPEYEHI VLVHYRDVSE REEGQQTGGQ VYQFAPILST QNVSYNQYIG DSSDIYQQSS
0201: TSPGVAEVNS NLEGSASSSE FGQALKMLKE QLSIGDEHVN SVDPHYIQPE SLDSLQFLEY SDIDHLAQPT TVYQRPENNK LERCYGGNFG AQYSAKNDSN
0301: KLERCYGGYV GGAEYHSSNL MLVKNGSGPS GGTGGSGDQG SESWKDVLEA CEASIPLNSE GSTPSSAKGL LAGLQEDSNW SYSNQVDQST FLLPQDLGSF
0401: QLPASYSALV APENNGEYCG MMEDGMKIGL PFEQEMRVTG AHNQKFTIQD ISPDWGYANE TTKVIIIGSF LCDPTESTWS CMFGNAQVPF EIIKEGVIRC
0501: EAPQCGPGKV NLCITSGDGL LCSEIREFEY REKPDTCCPK CSEPQTSDMS TSPNELILLV RFVQTLLSDR SSERKSNLES GNDKLLTKLK ADDDQWRHVI
0601: GTIIDGSASS TSTVDWLLQE LLKDKLDTWL SSRSCDEDYI TCSLSKQEQG IIHMVAGLGF EWAFYPILAH GVNVDFRDIK GWSALHWAAQ FGSEKMVAAL
0701: IASGASAGAV TDPSRQDPNG KTAASIAASN GHKGLAGYLS EVALTNHLSS LTLEETENSK DTAQVQTEKT LNSISEQSPS GNEDQVSLKD TLAAVRNAAQ
0801: AAARIQAAFR AHSFRKRKQR EAALVACLQE YGMYCEDIEG ISAMSKLTFG KGRNYNSAAL SIQKNFRGYK DRKCFLELRQ KVVKIQAHVR GYQIRKNYKV
0901: ICWAVRILDK VVLRWRRKGV GLRGFRQDVE STEDSEDEDI LKVFRKQKVD VAVNEAFSRV LSMSNSPEAR QQYHRVLKRY CQTKAELGKT ETLVGEDDDG
1001: LFDIADMEYD TLFSLP

Arabidopsis Description

CAMTA4Calmodulin-binding transcription activator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.