Factsheet for PGSC0003DMT400011979

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099340.1.1	Tomato	nucleus	94.59	72.57
CDY45590	Canola	cytosol	25.78	58.96
GSMUA_Achr5P21190_001	Banana	cytosol	42.31	55.83
VIT_05s0077g01240.t01	Wine grape	cytosol	62.96	47.68
KRH37009	Soybean	nucleus	58.26	44.9
AT3G16940.1	Thale cress	nucleus	53.99	44.85
KRH50762	Soybean	nucleus	58.83	44.84
KRH11981	Soybean	nucleus	57.27	44.13
Bra022188.1-P	Field mustard	cytosol	52.56	43.41
KRH02327	Soybean	nucleus	56.98	43.38
CDX92108	Canola	cytosol	52.71	43.38
CDX95894	Canola	cytosol	51.99	42.79
Bra038040.1-P	Field mustard	nucleus	55.7	42.55
CDY58036	Canola	nucleus	55.7	42.55
CDY22778	Canola	nucleus	55.7	42.55
TraesCS2B01G254000.2	Wheat	cytosol	44.3	41.69
GSMUA_Achr8P10490_001	Banana	cytosol	47.15	39.5
TraesCS2D01G237300.2	Wheat	cytosol	44.02	34.07
TraesCS2A01G229400.1	Wheat	nucleus	44.02	34.07
KXG36244	Sorghum	nucleus	44.16	33.92
HORVU2Hr1G051690.3	Barley	cytosol	44.02	33.66
Os07t0490200-01	Rice	nucleus	43.87	33.23
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	44.16	32.02
PGSC0003DMT400084738	Potato	cytosol	27.07	27.78
PGSC0003DMT400038758	Potato	cytosol	27.64	23.8
CDY69566	Canola	nucleus	2.56	6.59
GSMUA_Achr5P21200_001	Banana	cytosol	0.57	2.72
TraesCS2B01G254100.1	Wheat	cytosol	0.28	1.45

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565	GO:GO:0045893	GO:GO:0070417
InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS
InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1A0H4	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF12796
EnsemblPlantsGene:PGSC0003DMG400004701	PGSC:PGSC0003DMG400004701	EnsemblPlants:PGSC0003DMT400011979	PFscan:PS50088	PFscan:PS50096	PFscan:PS50297
PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	SMART:SM00015	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF52540
SUPFAM:SSF81296	UniParc:UPI0002968AC4	SEG:seg	:	:	:

Description

Calmodulin-binding transcription activator (Camta), plants [Source:PGSC_GENE;Acc:PGSC0003DMG400004701]

Coordinates

chr12:-:60065036..60071133

Molecular Weight (calculated)

79566.0 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.472

Length

702 amino acids

Sequence
(BLAST)

001: MTVQNHEQRL LEINTLEWDD LLAPGDPNKI VATQQGSKTA YVQHTSYEQH NLCELNGYSL NGVSSSLERI STVNNSNEII FQTVDGQMTP SFEKNESGVM
101: TVSTGDSFDS LNQDRLQTQD SFGRWMNYFI TDSPESTDDP TLESSVSTGQ SYAREQTFNI TEISPAWASS TEETKIIVIG QFHGEQSHLE SSCLHCVCGD
201: ACFPAEVLQP GVYRCIVSPQ TPGLVNIYLS FDGNKPISQV MSFEFRAPSV QVWTEPPESK SDWDEFRNQM RLAHLLFSTS KSLNILSSKI HQDLLKDAKT
301: FAGKCSHIID DWACLIKSIE DKKVSVPRAK DCLFELSLKT RLQEWLLERV VEGCKISEHD EQGQGVIHLC AILGYTWAVY LFSWSGLSLD YRDKYGWTAL
401: HWAAYYGREK MVATLLSAGA KPNLVTDPTS ENLGGCTASD LASKNGHEGL GAYLAEKALV AQFNDMTLAG NISGSLQTTT ESINPGNFTE EELNLKDSLA
501: AYRTAADAAA RIQAAFRERA LKVRTEAVES SNSEMEARNI IAAMKIQHAF RNYEMQKQLA AAARIQYRFR TWKMRREFLH MRRQAIKIQA VFRGFQVRRQ
601: YRKITWSVGV LEKAIFRWRL KRKGLRGLKL QSSQVVKSDD AEEDFFQASR KQAEERIERS VVRVQAMFRS KQAQEQYRRM KLEHNKAMLE YEGTLNPDTE
701: MD

Best Arabidopsis Sequence Match ( AT3G16940.3 )
(BLAST)

001: MLEEAKSRWL RPNEIHAILY NPKYFTINVK PVNLPNSGRI ILFDRKMLRN FRKDGHNWKK KKDGRTVKEA HEHLKVGNEE RIHVYYAHGE DNTTFVRRCY
101: WLLDKARENI VLVHYRDTQE AATTSGDSIS SPISVSEQTF PNRVAAEDID TVVRNHDISL HDINTLDWDE LLVPTDLNNQ SAPTVDNLSY FTEPLQNAAN
201: GTAEHGNATV ADGSLDALLN DGPQSRESFG RWMNSFISES NGSLEDPSFE PMVMPRQDPL APQAVFHSHS NIPEQVFNIT DVSPAWAYSS EKTKILVTGF
301: LHDSYQHLER SNLYCVCGDF CVPAEYLQAG VYRCIIPPHS PGMVNLYLSA DGHKPISQCF RFEHRAVPVL DKTVPEDNQD SKWEEFEFQV RLSHLLFTSS
401: NKLNVLSSKI SPHNLRDAKK LASKTNHLLN SWAYLVKSIQ GNKVSFDQAK DHLFELSLKN RLKEWLMEKV LEGRNTLDYD SKGLGVIHLC ASLGYTWSVQ
501: LFSLSGLSLN FRDKQGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDSTK DNLGGCMAAD LAQQNGYDGL AAYLAEKCLV AQFRDMKIAG NITGDLEACK
601: AEMLNQGTLP EDEQSLKDAL AAYRTAAEAA ARIQGAFREK ALKAARSSVI QFANKEEEAK SIIAAMKIQN AFRKYDTRRK IEAAYRIQCR FQTWKIRREY
701: LNMRRQAIRI QAAFRGLQAR RQYKKILWSV GVLEKAVLRW RQKRKGFRGL QVAAEEDSPG EAQEDFYKTS QRQAEERLER SVVRVQAMFR SKKAQQDYRR
801: MKLTHEEAQL EYGCLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.