CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G254100.1	Wheat	cytosol	12.69	84.06
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	86.0	81.2
Os07t0490200-01	Rice	nucleus	74.62	73.57
TraesCS2A01G229400.1	Wheat	nucleus	72.21	72.77
TraesCS2D01G237300.2	Wheat	cytosol	72.1	72.66
HORVU2Hr1G051690.3	Barley	cytosol	71.77	71.46
TraesCS2B01G254000.2	Wheat	cytosol	58.1	71.18
GSMUA_Achr5P21200_001	Banana	cytosol	10.5	65.31
Solyc01g060170.2.1	Tomato	nucleus	10.5	60.38
GSMUA_Achr5P21190_001	Banana	cytosol	33.59	57.71
GSMUA_Achr8P10490_001	Banana	cytosol	50.22	54.77
CDY45590	Canola	cytosol	16.41	48.86
AT3G16940.1	Thale cress	nucleus	43.98	47.57
CDX92108	Canola	cytosol	43.65	46.78
Bra022188.1-P	Field mustard	cytosol	43.33	46.59
KRH37009	Soybean	nucleus	46.06	46.21
KRH11981	Soybean	nucleus	45.95	46.1
CDX95894	Canola	cytosol	43.0	46.07
VIT_05s0077g01240.t01	Wine grape	cytosol	46.39	45.74
Solyc01g060140.2.1	Tomato	nucleus	33.26	45.58
KRH50762	Soybean	nucleus	45.84	45.49
KRH02327	Soybean	nucleus	45.3	44.9
Solyc12g099340.1.1	Tomato	nucleus	44.31	44.26
PGSC0003DMT400011979	Potato	cytosol	33.92	44.16
CDY22778	Canola	nucleus	44.09	43.85
CDY58036	Canola	nucleus	43.98	43.74
Bra038040.1-P	Field mustard	nucleus	43.98	43.74
CDY69566	Canola	nucleus	12.47	41.76
OQU81398	Sorghum	nucleus	29.21	26.83
EES01985	Sorghum	nucleus	24.73	26.75
KXG36730	Sorghum	nucleus	28.67	25.44
OQU91909	Sorghum	cytosol	28.23	25.24
EER94762	Sorghum	nucleus	27.57	24.61
OQU93088	Sorghum	mitochondrion	26.7	24.55

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	UniProt:A0A1B6QE93	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:CG-1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565	GO:GO:0045893
GO:GO:0070417	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683
InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KXG36244	ProteinID:KXG36244
ProteinID:KXG36244.1	ProteinID:OQU89964.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF03859	PFAM:PF12796
PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3
SMART:SM00015	SMART:SM00248	SMART:SM01076	EnsemblPlantsGene:SORBI_3002G306000	SUPFAM:SSF48403	SUPFAM:SSF52540
SUPFAM:SSF81296	UniParc:UPI00081AE224	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:68083385..68092596

Molecular Weight (calculated)

102445.0 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.513

Length

914 amino acids

Sequence
(BLAST)

001: MAGGAGGRDP LVASEIHGFL TSADLNFDKL MMEAGTRWFR PNEIYAVLAN YARFKVHAQP IDKPISGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH
101: EKLKIGNEEK VHVYYARGED DPNFFRRCYW LLDKELERIV LVHYRQTSEE NALPPPHAEA EVAEVPPINM AHYTSPLTST DSASAHTELS SVAAAPEINS
201: NGGRAISSET DDHGSSLESF WADLLESSMK NDTPIGASSC GGSLASNQQT NNGTRDSGNN ILHANATSNA IFAPTTNVVS EAYANPGHNQ ASENYFGSLK
301: HQANNSPSLL TSDLDSQSKQ HANSLMKAPV YGNMPNDVPA RQNSLGLWKY LDDDISLENN PSSGILPTEQ VTDERPFHIT DISSEWAYCT EETKVLVVGY
401: FHENYKHLAG TNLFCVIGDQ CVVANIVQTG VYRLIVRPHV PGQVNLYLTL DGKTPISEVL SFDYRMVPDS QILADDEPQK SKLQMQMRLA RLLFTTNKKK
501: MAPKFLVEGT KVSNLLSVSA EKEWMDLLKF GSDSKGTYVP AIEGLLELVL RNRLQEWLVE KVIEGQKSTD RDDLGQGPIH LCSFLGYTWA IRLFSLSGFS
601: LDFRDSSGWT ALHWAAYYGR EKMVAALLSA GANPSLVTDP THDDPGGYTA ADLAARQGYD GLAAYLAEKG LTAHFEAMSL SKDKRSTSRT QSLKQNTMEF
701: ENLSEQELCL RESLAAYRNA ADAANNIQAA LRERTLKLQT KAIQLANPET EAASIVAAMR IQHAFRNYNR KKMMRAAARI QSHFRTWQIR RNFMNMRRQA
801: IKIQAAYRGH QVRRQYRKVL WSVGVVEKAI LRWRKKRKGL RGIATGMPVE MATDAEAAST AEEDYYQVGR QQAEDRFNRS VVRVQALFRS HRAQQEYRRM
901: KVAHEEAKVE FSQN

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.