CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50762	Soybean	nucleus	94.69	94.79
KRH11981	Soybean	nucleus	71.58	72.45
KRH37009	Soybean	nucleus	71.26	72.12
VIT_05s0077g01240.t01	Wine grape	cytosol	63.88	63.54
GSMUA_Achr5P21200_001	Banana	cytosol	9.76	61.22
CDY69566	Canola	nucleus	18.11	61.17
TraesCS2B01G254100.1	Wheat	cytosol	9.11	60.87
AT3G16940.1	Thale cress	nucleus	53.8	58.7
Solyc12g099340.1.1	Tomato	nucleus	58.03	58.47
PGSC0003DMT400011979	Potato	cytosol	43.38	56.98
CDY22778	Canola	nucleus	56.72	56.91
Bra022188.1-P	Field mustard	cytosol	52.39	56.82
Bra038040.1-P	Field mustard	nucleus	56.51	56.69
CDY58036	Canola	nucleus	56.51	56.69
CDX95894	Canola	cytosol	52.39	56.62
CDX92108	Canola	cytosol	52.39	56.62
CDY45590	Canola	cytosol	18.76	56.35
Solyc01g060140.2.1	Tomato	nucleus	40.56	56.07
GSMUA_Achr5P21190_001	Banana	cytosol	30.69	53.2
GSMUA_Achr8P10490_001	Banana	cytosol	42.73	47.02
TraesCS2A01G229400.1	Wheat	nucleus	44.79	45.53
TraesCS2D01G237300.2	Wheat	cytosol	44.58	45.31
KXG36244	Sorghum	nucleus	44.9	45.3
HORVU2Hr1G051690.3	Barley	cytosol	44.58	44.77
Os07t0490200-01	Rice	nucleus	44.69	44.44
TraesCS2B01G254000.2	Wheat	cytosol	34.49	42.63
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	43.17	41.12
KRH15615	Soybean	cytosol	12.47	36.28
KRH31521	Soybean	nucleus	29.18	29.56
KRG97392	Soybean	nucleus	29.93	28.69
KRH58784	Soybean	nucleus	30.26	28.38
KRH42689	Soybean	cytosol	29.61	28.29
KRH02436	Soybean	nucleus	30.26	27.93
KRH58270	Soybean	nucleus	31.89	27.02
KRH42152	Soybean	nucleus	31.56	26.97
KRH10541	Soybean	nucleus	31.45	26.65
KRH43898	Soybean	nucleus	30.8	26.27
KRH43177	Soybean	nucleus	31.13	26.04
KRH59333	Soybean	nucleus	31.13	25.58

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	EntrezGene:100807130	MapMan:15.5.26	Gene3D:2.60.40.10	EMBL:ACUP02010302
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:CG-1_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G031900
GO:GO:0001077	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0045944	UniProt:I1MRP1	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559	InterPro:IPR013783
InterPro:IPR020683	InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRH02327
ProteinID:KRH02327	ProteinID:KRH02327.1	PFAM:PF00612	PFAM:PF03859	PFAM:PF12796	PFscan:PS50088
PFscan:PS50096	PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	SMART:SM00015
SMART:SM00248	SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF81296	UniParc:UPI000296EC75	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:2342957..2351065

Molecular Weight (calculated)

103875.0 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.394

Length

922 amino acids

Sequence
(BLAST)

001: MANNLAAQQL VGSEIHGFHT LQDLDVGSIM EEARTRWLRP NEIHAMLCNY KYFTINVKPV NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE
101: HLKVGNEERI HVYYAHGQDN PNFVRRCYWL LDKSMEHIVL VHYREIQEMQ GSPVTPVNSH SSSVSDPPAP WILSEEIDSG TTTAYAGDTS ANINVKSHEL
201: RLHEINTLDW DDLVDANDHN TTTVPNGGTV PYFDLQDQIL LNDSFSNVAN NLSADIPSFG SLTQPIAGSN SVPYNFSSVN LQTMDDQANP HEQRNNTVSL
301: SGVDSLDTLV NDRLQSQNSF GMWVNPIMSD SPCSVDDPAL ESPVSSVHEP YSSLIVDSQQ SSLPGQVFTI TDVSPTCVSS TEKSKVLVTG FFHKDYMHLS
401: KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH SPGFVNLYMS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFQLQM RLAYLLFKQL NLDVISTKVS
501: PNRLKEARQF ALKTSFISNS WQYLIKSTED NQIPFSQAKD ALFGIALKSR LKEWLLERIV LGCKTTEYDA HGQSVIHLCA ILGYTWAVSL FSWSGLSLDF
601: RDRSGWTALH WAAYCGREKM VATLLSAGAK PNLVTDPTPQ NPGGCTAADL AYMRGHDGLA AYLSEKSLVQ HFNDMSLAGN ISGSLETSTT DPVISANLTE
701: DQQNLKDTLA AYRTAAEAAS RIHAAFREHS LKLRTKAVAS SHPEAQARKI VAAMKIQHAF RNHKTKKVMA AAARIQCTYR TWKIRKEFLN MRCQAVKIQA
801: AFRCFQVRKH YCKILWSVGV VEKAVLRWRL KRRGFRGLQV KTVEAGTGDQ DQQSDVEEEF FRAGRKQAEE RVERSVVRVQ AMFRSKKAQE EYRRMKLALD
901: QAKLEREFER LLSTEVDMQL KT

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.