Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25724727
|
msms PMID:
25724727
doi
Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan. Electronic address: skomatsu@affrc.go.jp.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH02327 | Soybean | nucleus | 94.79 | 94.69 |
KRH37009 | Soybean | nucleus | 72.86 | 73.66 |
KRH11981 | Soybean | nucleus | 72.75 | 73.55 |
VIT_05s0077g01240.t01 | Wine grape | cytosol | 64.28 | 63.86 |
GSMUA_Achr5P21200_001 | Banana | cytosol | 9.66 | 60.54 |
CDY69566 | Canola | nucleus | 17.92 | 60.44 |
TraesCS2B01G254100.1 | Wheat | cytosol | 9.01 | 60.14 |
Solyc12g099340.1.1 | Tomato | nucleus | 59.61 | 60.0 |
AT3G16940.1 | Thale cress | nucleus | 54.4 | 59.29 |
PGSC0003DMT400011979 | Potato | cytosol | 44.84 | 58.83 |
Bra022188.1-P | Field mustard | cytosol | 52.88 | 57.29 |
Solyc01g060140.2.1 | Tomato | nucleus | 41.48 | 57.27 |
CDY22778 | Canola | nucleus | 57.11 | 57.24 |
CDX92108 | Canola | cytosol | 52.88 | 57.09 |
CDY58036 | Canola | nucleus | 56.89 | 57.02 |
Bra038040.1-P | Field mustard | nucleus | 56.89 | 57.02 |
CDX95894 | Canola | cytosol | 52.77 | 56.98 |
CDY45590 | Canola | cytosol | 18.89 | 56.68 |
GSMUA_Achr5P21190_001 | Banana | cytosol | 30.94 | 53.57 |
GSMUA_Achr8P10490_001 | Banana | cytosol | 43.11 | 47.37 |
KXG36244 | Sorghum | nucleus | 45.49 | 45.84 |
TraesCS2A01G229400.1 | Wheat | nucleus | 44.73 | 45.42 |
TraesCS2D01G237300.2 | Wheat | cytosol | 44.41 | 45.09 |
HORVU2Hr1G051690.3 | Barley | cytosol | 44.63 | 44.77 |
Os07t0490200-01 | Rice | nucleus | 44.95 | 44.66 |
TraesCS2B01G254000.2 | Wheat | cytosol | 34.53 | 42.63 |
Zm00001d021516_P003 | Maize | cytosol, nucleus, plasma membrane | 43.54 | 41.43 |
KRH15615 | Soybean | cytosol | 12.38 | 35.96 |
KRH31521 | Soybean | nucleus | 29.21 | 29.56 |
KRG97392 | Soybean | nucleus | 30.08 | 28.79 |
KRH58784 | Soybean | nucleus | 30.29 | 28.38 |
KRH42689 | Soybean | cytosol | 29.64 | 28.29 |
KRH02436 | Soybean | nucleus | 30.62 | 28.23 |
KRH58270 | Soybean | nucleus | 32.03 | 27.11 |
KRH42152 | Soybean | nucleus | 31.7 | 27.06 |
KRH10541 | Soybean | nucleus | 31.81 | 26.93 |
KRH43898 | Soybean | nucleus | 31.05 | 26.46 |
KRH43177 | Soybean | nucleus | 31.27 | 26.13 |
KRH59333 | Soybean | nucleus | 31.27 | 25.67 |
Protein Annotations
Gene3D:1.20.5.190 | Gene3D:1.25.40.20 | EntrezGene:100793970 | MapMan:15.5.26 | Gene3D:2.60.40.10 | EMBL:ACUP02004715 |
InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:CG-1_dom | ncoils:Coil | EnsemblPlantsGene:GLYMA_07G242000 |
GO:GO:0001077 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
GO:GO:0045944 | InterPro:IPR000048 | InterPro:IPR002110 | InterPro:IPR005559 | InterPro:IPR013783 | InterPro:IPR020683 |
InterPro:IPR036770 | InterPro:IPT_dom | InterPro:IQ_motif_EF-hand-BS | InterPro:Ig-like_fold | InterPro:Ig_E-set | UniProt:K7L3K8 |
EnsemblPlants:KRH50762 | ProteinID:KRH50762 | ProteinID:KRH50762.1 | InterPro:P-loop_NTPase | PFAM:PF00612 | PFAM:PF01833 |
PFAM:PF03859 | PFAM:PF12796 | PFscan:PS50088 | PFscan:PS50096 | PFscan:PS50297 | PFscan:PS51437 |
PANTHER:PTHR23335 | PANTHER:PTHR23335:SF3 | SMART:SM00015 | SMART:SM00248 | SMART:SM01076 | SUPFAM:SSF48403 |
SUPFAM:SSF52540 | SUPFAM:SSF81296 | UniParc:UPI0002950A7A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:-:42186030..42194069
Molecular Weight (calculated)
104300.0 Da
IEP (calculated)
7.445
GRAVY (calculated)
-0.455
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNLAVQLV GSEMHGFHTL QDLDVGSIME EARTRWLRPN EIHAMLCNYK YFTINVKPVN LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH
101: LKVGNEERIH VYYAHGQDNP NFVRRCYWLL DKSMEHIVLV HYRETQEMQG SPVTPVNSHS SSVSDPPAPW ILSEEIDSGT TTAYTGDMSN NINVKSHELR
201: LHEINTLEWD DLVDTNDHNA STVPNGGTVP YFDQQDQILL NDSFGNVANN LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL
301: SGVDSLDTLV NDRLQSQDSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE SSLPEQVFTI TDVSPTCVSS TEKSKVLVTG FFLKDYMHLS
401: KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH SPGFVNLYLS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFRQQM RLAYLLFAKQ LNLDVISSKV
501: SPNRLKEARQ FALKTSFISN SWQYLIKSTE DNQIPFSQAK DALFGITLKN RLKEWLLERI VLGCKTTEYD AHGQSVIHLC AILGYNWAVS LFSWSGLSLD
601: FRDRFGWTAL HWAAYCGREK MVATLLSAGA KPNLVTDPTP QNPGGCTAAD LAYMRGHDGL AAYLSEKSLV QHFNDMSLAG NISGSLETST TDPVNPANLT
701: EDQQNLKDTL TAYRTAAEAA SRIHAAFREH SLKLRTKAVA SSNPEAQARK IVAAMKIQHA FRNHETKKMM AAAARIQCTY RTWKIRKEFL NMRRQAVKIQ
801: AAFRCFQVRK HYRKILWSVG VVEKAVLRWR LKRRGFRGLQ VKTVDAGTGD QDQQSDVEEE FFRTGRKQAE ERVERSVVRV QAMFRSKKAQ EEYRRMKLAL
901: NQAKLEREYE QLLSTEVDMQ L
101: LKVGNEERIH VYYAHGQDNP NFVRRCYWLL DKSMEHIVLV HYRETQEMQG SPVTPVNSHS SSVSDPPAPW ILSEEIDSGT TTAYTGDMSN NINVKSHELR
201: LHEINTLEWD DLVDTNDHNA STVPNGGTVP YFDQQDQILL NDSFGNVANN LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL
301: SGVDSLDTLV NDRLQSQDSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE SSLPEQVFTI TDVSPTCVSS TEKSKVLVTG FFLKDYMHLS
401: KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH SPGFVNLYLS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFRQQM RLAYLLFAKQ LNLDVISSKV
501: SPNRLKEARQ FALKTSFISN SWQYLIKSTE DNQIPFSQAK DALFGITLKN RLKEWLLERI VLGCKTTEYD AHGQSVIHLC AILGYNWAVS LFSWSGLSLD
601: FRDRFGWTAL HWAAYCGREK MVATLLSAGA KPNLVTDPTP QNPGGCTAAD LAYMRGHDGL AAYLSEKSLV QHFNDMSLAG NISGSLETST TDPVNPANLT
701: EDQQNLKDTL TAYRTAAEAA SRIHAAFREH SLKLRTKAVA SSNPEAQARK IVAAMKIQHA FRNHETKKMM AAAARIQCTY RTWKIRKEFL NMRRQAVKIQ
801: AAFRCFQVRK HYRKILWSVG VVEKAVLRWR LKRRGFRGLQ VKTVDAGTGD QDQQSDVEEE FFRTGRKQAE ERVERSVVRV QAMFRSKKAQ EEYRRMKLAL
901: NQAKLEREYE QLLSTEVDMQ L
001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
Arabidopsis Description
calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.