Skip to main content
crop-pal logo
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 25724727
msms PMID: 25724727 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan. Electronic address: skomatsu@affrc.go.jp.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH02327 Soybean nucleus 94.79 94.69
KRH37009 Soybean nucleus 72.86 73.66
KRH11981 Soybean nucleus 72.75 73.55
VIT_05s0077g01240.t01 Wine grape cytosol 64.28 63.86
GSMUA_Achr5P21200_001 Banana cytosol 9.66 60.54
CDY69566 Canola nucleus 17.92 60.44
TraesCS2B01G254100.1 Wheat cytosol 9.01 60.14
Solyc12g099340.1.1 Tomato nucleus 59.61 60.0
AT3G16940.1 Thale cress nucleus 54.4 59.29
PGSC0003DMT400011979 Potato cytosol 44.84 58.83
Bra022188.1-P Field mustard cytosol 52.88 57.29
Solyc01g060140.2.1 Tomato nucleus 41.48 57.27
CDY22778 Canola nucleus 57.11 57.24
CDX92108 Canola cytosol 52.88 57.09
CDY58036 Canola nucleus 56.89 57.02
Bra038040.1-P Field mustard nucleus 56.89 57.02
CDX95894 Canola cytosol 52.77 56.98
CDY45590 Canola cytosol 18.89 56.68
GSMUA_Achr5P21190_001 Banana cytosol 30.94 53.57
GSMUA_Achr8P10490_001 Banana cytosol 43.11 47.37
KXG36244 Sorghum nucleus 45.49 45.84
TraesCS2A01G229400.1 Wheat nucleus 44.73 45.42
TraesCS2D01G237300.2 Wheat cytosol 44.41 45.09
HORVU2Hr1G051690.3 Barley cytosol 44.63 44.77
Os07t0490200-01 Rice nucleus 44.95 44.66
TraesCS2B01G254000.2 Wheat cytosol 34.53 42.63
Zm00001d021516_P003 Maize cytosol, nucleus, plasma membrane 43.54 41.43
KRH15615 Soybean cytosol 12.38 35.96
KRH31521 Soybean nucleus 29.21 29.56
KRG97392 Soybean nucleus 30.08 28.79
KRH58784 Soybean nucleus 30.29 28.38
KRH42689 Soybean cytosol 29.64 28.29
KRH02436 Soybean nucleus 30.62 28.23
KRH58270 Soybean nucleus 32.03 27.11
KRH42152 Soybean nucleus 31.7 27.06
KRH10541 Soybean nucleus 31.81 26.93
KRH43898 Soybean nucleus 31.05 26.46
KRH43177 Soybean nucleus 31.27 26.13
KRH59333 Soybean nucleus 31.27 25.67
Protein Annotations
Gene3D:1.20.5.190Gene3D:1.25.40.20EntrezGene:100793970MapMan:15.5.26Gene3D:2.60.40.10EMBL:ACUP02004715
InterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfInterPro:CG-1_domncoils:CoilEnsemblPlantsGene:GLYMA_07G242000
GO:GO:0001077GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006366GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565
GO:GO:0045944InterPro:IPR000048InterPro:IPR002110InterPro:IPR005559InterPro:IPR013783InterPro:IPR020683
InterPro:IPR036770InterPro:IPT_domInterPro:IQ_motif_EF-hand-BSInterPro:Ig-like_foldInterPro:Ig_E-setUniProt:K7L3K8
EnsemblPlants:KRH50762ProteinID:KRH50762ProteinID:KRH50762.1InterPro:P-loop_NTPasePFAM:PF00612PFAM:PF01833
PFAM:PF03859PFAM:PF12796PFscan:PS50088PFscan:PS50096PFscan:PS50297PFscan:PS51437
PANTHER:PTHR23335PANTHER:PTHR23335:SF3SMART:SM00015SMART:SM00248SMART:SM01076SUPFAM:SSF48403
SUPFAM:SSF52540SUPFAM:SSF81296UniParc:UPI0002950A7ASEG:seg::
Description
hypothetical protein
Coordinates
chr7:-:42186030..42194069
Molecular Weight (calculated)
104300.0 Da
IEP (calculated)
7.445
GRAVY (calculated)
-0.455
Length
921 amino acids
Sequence
(BLAST)
001: MANNLAVQLV GSEMHGFHTL QDLDVGSIME EARTRWLRPN EIHAMLCNYK YFTINVKPVN LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH
101: LKVGNEERIH VYYAHGQDNP NFVRRCYWLL DKSMEHIVLV HYRETQEMQG SPVTPVNSHS SSVSDPPAPW ILSEEIDSGT TTAYTGDMSN NINVKSHELR
201: LHEINTLEWD DLVDTNDHNA STVPNGGTVP YFDQQDQILL NDSFGNVANN LSAEIPSFGN LTQPIAGSNR VPYNFSESVT LQTMDNQANP HEQKNNTVSL
301: SGVDSLDTLV NDRLQSQDSF GMWVNHIMSD SPCSVDDPAL ESPVSSIHEP YSSLVVDSQE SSLPEQVFTI TDVSPTCVSS TEKSKVLVTG FFLKDYMHLS
401: KSNLLCVCGD VSVPAEIVQV GVYRCWVSPH SPGFVNLYLS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFRQQM RLAYLLFAKQ LNLDVISSKV
501: SPNRLKEARQ FALKTSFISN SWQYLIKSTE DNQIPFSQAK DALFGITLKN RLKEWLLERI VLGCKTTEYD AHGQSVIHLC AILGYNWAVS LFSWSGLSLD
601: FRDRFGWTAL HWAAYCGREK MVATLLSAGA KPNLVTDPTP QNPGGCTAAD LAYMRGHDGL AAYLSEKSLV QHFNDMSLAG NISGSLETST TDPVNPANLT
701: EDQQNLKDTL TAYRTAAEAA SRIHAAFREH SLKLRTKAVA SSNPEAQARK IVAAMKIQHA FRNHETKKMM AAAARIQCTY RTWKIRKEFL NMRRQAVKIQ
801: AAFRCFQVRK HYRKILWSVG VVEKAVLRWR LKRRGFRGLQ VKTVDAGTGD QDQQSDVEEE FFRTGRKQAE ERVERSVVRV QAMFRSKKAQ EEYRRMKLAL
901: NQAKLEREYE QLLSTEVDMQ L
Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)
001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI
Arabidopsis Description
calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.