CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31521	Soybean	nucleus	85.86	90.77
KRH15615	Soybean	cytosol	22.87	69.4
KRH58784	Soybean	nucleus	66.32	64.9
KRH42689	Soybean	cytosol	64.03	63.83
Zm00001d009281_P001	Maize	cytosol	9.36	45.45
OQU81398	Sorghum	nucleus	43.45	42.01
Zm00001d003958_P013	Maize	nucleus	42.41	41.68
Os04t0388500-01	Rice	nucleus	43.35	41.58
TraesCS2B01G300800.2	Wheat	nucleus	43.56	40.76
TraesCS2A01G283800.1	Wheat	nucleus	43.35	40.6
HORVU2Hr1G069950.6	Barley	nucleus	43.04	40.43
EES01985	Sorghum	nucleus	35.45	40.35
TraesCS2D01G282800.6	Wheat	nucleus	43.04	40.19
Zm00001d025235_P004	Maize	nucleus	41.89	40.18
Os01t0923600-02	Rice	nucleus	35.03	38.38
TraesCS3B01G469100.2	Wheat	cytosol	32.02	38.26
TraesCS3A01G433300.2	Wheat	nucleus	32.54	38.12
TraesCS3D01G426700.5	Wheat	nucleus	32.12	37.78
Zm00001d042313_P004	Maize	nucleus	33.89	36.55
HORVU3Hr1G094860.7	Barley	cytosol, nucleus, plastid	31.39	35.74
KRH11981	Soybean	nucleus	28.9	30.52
KRH37009	Soybean	nucleus	28.79	30.41
KRH02436	Soybean	nucleus	31.5	30.33
KRH50762	Soybean	nucleus	28.79	30.08
KRH10541	Soybean	nucleus	33.89	29.96
KRH02327	Soybean	nucleus	28.69	29.93
KRH43898	Soybean	nucleus	33.26	29.6
KRH43177	Soybean	nucleus	33.68	29.4
KRH42152	Soybean	nucleus	32.74	29.19
KRH59333	Soybean	nucleus	33.78	28.97
KRH58270	Soybean	nucleus	32.74	28.95

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	EntrezGene:100791430	MapMan:15.5.26	Gene3D:2.60.40.10	EMBL:ACUP02010795
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:CG-1_dom	EnsemblPlantsGene:GLYMA_18G005100	GO:GO:0001077
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0045944
InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770
InterPro:IPT_dom	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K7MP75	ProteinID:KRG97391.1
EnsemblPlants:KRG97392	ProteinID:KRG97392	ProteinID:KRG97392.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF01833
PFAM:PF03859	PFAM:PF12796	PFscan:PS50088	PFscan:PS50096	PFscan:PS50297	PFscan:PS51437
PANTHER:PTHR23335	PANTHER:PTHR23335:SF1	SMART:SM00015	SMART:SM00248	SMART:SM01076	SUPFAM:SSF48403
SUPFAM:SSF52540	SUPFAM:SSF81296	UniParc:UPI000233F584	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:394711..403689

Molecular Weight (calculated)

108042.0 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.520

Length

962 amino acids

Sequence
(BLAST)

001: MPPGLEYNID DLFQEAKRRW LKPVEVLYIL RNHDQCEFTH QPPHQPAGGS LLLFNRRIMR FFRKDGHNWR KKKDGKTVGE AHERLKVGNV EILNCYYAHG
101: EENRTFQRRS YWMLEPEYDH IVLVHYRETS EGKSKSEHVT QLSSGSSPVF SQSHSSYTTH NPGTASMFGD SCEPNQKFSS SGSLEDTSEA QALRQLEEQL
201: SLNEDIFNEI ALDLIPGQDQ RVVYKQDNSV ALSGPNDPGQ PCDGYNGRED DSGTYYHDFL DDCPGGNEKT IYWTEVLESC KPLSVTKLPD QHAYDAIENG
301: KSLFSSGRGM IANREKNQWL NSNSNNVENS VFLFPQDIGV KFPPYSMVET PGTNYDYYET CFDQFQNQEP LGVDSSFTVV QKQKFTIRAV SPEYCYATET
401: TKVIIIGSFL CHDSDSTWAC MFGDVEVPAE IIQDGVICCE APSYLLGKVN LCVTSGNRVP CSEVRGFEFR NKTTSCTRCN SLETEGSKSL EDLLLLVRFA
501: EMLLSASTTK DDRIESGSYL STEQKDDDDS WSHIIIDTLL DGTRTSSDTV NWLLEELLKD KLQLWLSNRR DEGTGCSFSR KEQGIIHMIS GLGFEWALSP
601: ILSCGVNINF RDINGWTALH WAARFGREKM VASLIASGAS AGAVTDPSSQ DPTGKTAASI AASHGHKGLA GYLSEVDLTS HLSSLTLEES ELSKGSSELE
701: AELTVSSVSK ENLVASEDQV SLQAFLDAVR NAAQAAARIQ AAFRAHSFRK RKEREAAADA GLDGYCIDAG SIDNNISVLS AVSKLSSQSC RDYNLAALSI
801: QKKYRGWKGR KEFLALRQKV VKIQACVRGY QVRKQYKLIL WAVGILDKVV LRWRRKRIGI RSVRQEMESN EEESDDEDFL SVFRKEKVNA AIEKALKQVL
901: SMVHSSGARQ QYRRLLLLYR QAKAKTERGS TSDEAPLSTS EEEVSNMEDD DLCQFWETFW PS

Best Arabidopsis Sequence Match ( AT1G67310.1 )
(BLAST)

0001: MSSVAEDNSF TCDIATIFVA ICRNPPANPS DSLFQYEIST LYQEAHSRWL KPPEVLFILQ NHESLTLTNT APQRPTSGSL LLFNKRVLKF FRKDGHQWRR
0101: KRDGRAIAEA HERLKVGNAE ALNCYYAHGE QDPTFRRRIY WMLDPEYEHI VLVHYRDVSE REEGQQTGGQ VYQFAPILST QNVSYNQYIG DSSDIYQQSS
0201: TSPGVAEVNS NLEGSASSSE FGQALKMLKE QLSIGDEHVN SVDPHYIQPE SLDSLQFLEY SDIDHLAQPT TVYQRPENNK LERCYGGNFG AQYSAKNDSN
0301: KLERCYGGYV GGAEYHSSNL MLVKNGSGPS GGTGGSGDQG SESWKDVLEA CEASIPLNSE GSTPSSAKGL LAGLQEDSNW SYSNQVDQST FLLPQDLGSF
0401: QLPASYSALV APENNGEYCG MMEDGMKIGL PFEQEMRVTG AHNQKFTIQD ISPDWGYANE TTKVIIIGSF LCDPTESTWS CMFGNAQVPF EIIKEGVIRC
0501: EAPQCGPGKV NLCITSGDGL LCSEIREFEY REKPDTCCPK CSEPQTSDMS TSPNELILLV RFVQTLLSDR SSERKSNLES GNDKLLTKLK ADDDQWRHVI
0601: GTIIDGSASS TSTVDWLLQE LLKDKLDTWL SSRSCDEDYI TCSLSKQEQG IIHMVAGLGF EWAFYPILAH GVNVDFRDIK GWSALHWAAQ FGSEKMVAAL
0701: IASGASAGAV TDPSRQDPNG KTAASIAASN GHKGLAGYLS EVALTNHLSS LTLEETENSK DTAQVQTEKT LNSISEQSPS GNEDQVSLKD TLAAVRNAAQ
0801: AAARIQAAFR AHSFRKRKQR EAALVACLQE YGMYCEDIEG ISAMSKLTFG KGRNYNSAAL SIQKNFRGYK DRKCFLELRQ KVVKIQAHVR GYQIRKNYKV
0901: ICWAVRILDK VVLRWRRKGV GLRGFRQDVE STEDSEDEDI LKVFRKQKVD VAVNEAFSRV LSMSNSPEAR QQYHRVLKRY CQTKAELGKT ETLVGEDDDG
1001: LFDIADMEYD TLFSLP

Arabidopsis Description

CAMTA4Calmodulin-binding transcription activator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.