CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96915	Canola	nucleus	17.58	60.76
TraesCS2B01G254100.1	Wheat	cytosol	30.04	59.42
GSMUA_Achr5P21200_001	Banana	cytosol	31.5	58.5
CDY61797	Canola	nucleus	17.95	43.75
CDX81478	Canola	nucleus	17.95	31.21
CDY58036	Canola	nucleus	92.67	27.53
CDY22778	Canola	nucleus	91.94	27.31
CDX95894	Canola	cytosol	60.44	19.34
CDX92108	Canola	cytosol	60.07	19.23
KRH02327	Soybean	nucleus	61.17	18.11
KRH50762	Soybean	nucleus	60.44	17.92
KRH37009	Soybean	nucleus	58.24	17.45
KRH11981	Soybean	nucleus	57.88	17.34
VIT_05s0077g01240.t01	Wine grape	cytosol	53.48	15.75
Solyc12g099340.1.1	Tomato	nucleus	52.38	15.63
Os07t0490200-01	Rice	nucleus	43.96	12.95
TraesCS2A01G229400.1	Wheat	nucleus	42.12	12.68
TraesCS2D01G237300.2	Wheat	cytosol	41.76	12.57
HORVU2Hr1G051690.3	Barley	cytosol	42.12	12.53
KXG36244	Sorghum	nucleus	41.76	12.47
GSMUA_Achr8P10490_001	Banana	cytosol	35.16	11.46
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	36.63	10.33
CDX81217	Canola	nucleus	30.4	8.41
CDY25585	Canola	nucleus	30.4	8.38
CDX76935	Canola	nucleus	28.94	8.34
CDY13771	Canola	cytosol, nucleus, plastid	28.21	8.33
CDY21580	Canola	cytosol, nucleus, plastid	29.67	8.11
CDX89451	Canola	nucleus	30.4	8.07
CDX69907	Canola	nucleus	29.67	8.04
CDY18719	Canola	cytosol	29.3	7.85
CDY01799	Canola	nucleus	28.57	7.61
CDY07431	Canola	nucleus	26.74	7.56
CDY51184	Canola	nucleus	28.21	7.51
CDY12637	Canola	nucleus	27.84	7.35
CDY28897	Canola	nucleus	25.64	7.17
CDX96099	Canola	nucleus	27.84	6.04
TraesCS2B01G254000.2	Wheat	cytosol	7.69	2.82
PGSC0003DMT400011979	Potato	cytosol	6.59	2.56
Solyc01g060140.2.1	Tomato	nucleus	2.2	0.9
CDY45590	Canola	cytosol	0.73	0.65
CDX92455	Canola	cytosol	0.0	0.0
GSMUA_Achr5P21190_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY69566	EnsemblPlantsGene:GSBRNA2T00088866001	GO:A0A078JVJ3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CG-1_dom
InterPro:IPR005559	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	PFAM:PF03859	PFscan:PS51437	ProteinID:CDY69566
ProteinID:CDY69566.1	SMART:SM01076	UniParc:UPI0004EE867B	UniProt:A0A078JVJ3	MapMan:35.1	:

Description

BnaC08g48230DBnaC08g48230D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JVJ3]

Coordinates

chrLK039730:+:2046..4027

Molecular Weight (calculated)

31113.4 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.584

Length

273 amino acids

Sequence
(BLAST)

001: MAGVDSARLI GSEIHGFHTL QDLDIQTMLE EAYTRWLRPN EIHALLSNHK YFTINVKPVH LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH
101: LKVGNEERIH VYYAHGDDNP TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PVAEDINSGV SNACNTVPFF CFVYGFKARS
201: NSLVARNHEI SLHEINTLDW DELLVEADMT NQSSPTEDDV LYFTEQLQTA PMGSAQQGNH QAVYNGSTDI PSY

Best Arabidopsis Sequence Match ( AT3G16940.2 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQV

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.